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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataattagttgttttattttctttttattcaccacagtgcttctgattgtgcctgtttaaatggttcttattctactctatatgtag

Basic information

species Glycine max
transcript GLYMA11G03590.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03590.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 11
-GCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataatt---agttgttttattttctttttattcaccacagtgcttctgatt------gtgcctgtttaaatggttcttattctactctatatgtag--------------
 |  |||||| |  | ||||||||| | || ||||||||||||||||| |||||||| ||||| || || |||||||| ||| | ||| | |  || ||||||  ||    | ||  |   || | || |  |||||  ||  | ||||  ||       | ||| | |    | | | |  | ||   | |||                  
AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatcttggttcccttatttatcatttattacattttgatactgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315142|gb|FK009966.1|FK009966
EST:     TTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAG                         GCTAAATTGGGTGAGAAAAACAAGTTCTATTATGATGAGAAGCTGAAGAGA
genomic: TTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataattag ... ctatatgtagGCTAAATTGGGTGAGAAAAACAAGTTCTATTATGATGAGAAGCTGAAGAGA
EST: gi|192315141|gb|FK009965.1|FK009965
EST:     TTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAG                         GCTAAATTGGGTGAGAAAAACAAGTTCTATTATGATGAGAAGCTGAAGAGA
genomic: TTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataattag ... ctatatgtagGCTAAATTGGGTGAGAAAAACAAGTTCTATTATGATGAGAAGCTGAAGAGA