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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaacaaagaaactatggtgattgatatcctttcaaattagtccccatcctagtgttttttgcacgtttctaacttttctgttattgatttgggagcggtgaatcag

Basic information

species Glycine max
transcript GLYMA10G43230.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 21
-----------------------------------------------------------TTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaacaaagaaactatggtgattgatatcctttcaaattagtccccatcctagtgttttttgcacgtttctaacttttctgttattgatttgggagcggtgaatcag
                                                           ||||  | |||||| | ||||||||||||||||| ||||||||||| || ||| | || || |||||||| ||| ||||||| || || ||| || ||||||   |   | |   | |  | ||                                                                                        
TTTCATTCGCTGTATCAAGCCAAATAACATCCAGTCTCCCGGGGTGTATGAGCAAGGGCTTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGgttcgaatttcacggtctggatttcctacaagaatgtctcatcagaaattttcccgaaggtgacaatgccattcatcattagtag--------------------------------------------------------------------------------------

upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
TTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaacaaagaaactatggtgattgatatcctttcaaattagtccccatcctagtgttttttgcacgtttctaacttttctgttattgatttgggagcggtgaatcag
||||  | |||||| | ||||||||||||||||| ||||||||||| || ||| | || || |||||||| ||| ||||||| || || ||| || ||||||      |||| |  | |    | |||  ||    | |||   |    || | | || |||| ||      || |||      || |  |  |   |              
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgtg-----acaatgccattc--atcattagtagttgtgcaaggga----ccgtacaagcgtttcttcataagttttaatcacattgatcatattgcag--------------

upper sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 18
TTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtaga-acaacaaagaaactatggtgattga-------tatcctttcaaatta---gtccccatcctagtgttttttgcacgtttctaacttttctgttattgatttgggagcggtgaatcag
|||||||||||||  | ||||||||||| ||||| ||||| ||| | ||||| || ||||||||||| ||| |  ||||||| || |||||||| |||||||| | | |    | ||  | |  | ||  |       |   |||  |||||     | |   || ||    | | |     ||| ||  || | |    ||| || |       |  | |||
TTGTACTGCAGCAACTAAGATGTTGTGGAGTCCTAGAAGTAGTTAGAATATCGAGGTCGGGCTTTCCAACTCGGATGTCTCATCAGAAGTTTGCTAGAAGgtacacatagatgacaaggttttattatctagttgtattgcacttataaattttgtattcttttcttaagaatctgtttttattt-tattttattttcccttgtttggttgttaattgaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23055983|gb|BU577699.1|BU577699
EST:     TCAAGATCGGGCTTTCCTACTAGAGTATCTCACCAAAAGTTTGCCAGAAG                         ATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGT
genomic: TCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaac ... ggtgaatcagATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGT
EST: gi|19934507|gb|BQ079537.1|BQ079537
EST:     TCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAG                         ATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGT
genomic: TCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaac ... ggtgaatcagATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGT
EST: gi|18039602|gb|BM307896.1|BM307896
EST:     TCAAGATCGGGCTTTCCTACTAGAGTATCTCACCAAAAGTTTGCCAGAAG                         ATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGT
genomic: TCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaac ... ggtgaatcagATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGT