Sequence
atgc intronic sequence ATGC exonic sequenceAAATGAACTATACATCTGATGATCAGCCCAATCCCCGTGGTGAAATTTGTGTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGACgtaattacctttcctgttctgtgcttctaatgaatgaaattaccttgcatgtttaaaagtaattgaatttcaatcaaattgagcag
Basic information
species | Glycine max |
transcript | GLYMA10G39540.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 8
AAATGAACTATACATCTGATGATCAGCCCAATCCCCGTGGTGAAATTTGTGTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGACgtaattacctttcctgttct-------gtgcttctaatgaatgaaattaccttgcatgtttaaaagtaattgaatttcaatcaaattgagcag
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AAATGAATTATACATCTGATGATCAACCTTATCCTCGTGGAGAAATTTGTGTTAGAGGACCTATAATATTCCAGGGTTACTATAAGGATGAAGTTCAAACgtaaatttctatccgtcacttaaacatagctttgtactgaatgatcttcaactgca-acttatcaataaatacattttaa--aaacta--cag
upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 17
AAATGAACTATACATCTGATGATCAGCCCAATCCCCGTGGTGAAATTTGTGTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGACgtaattacctttcctgttctgtgcttctaatgaatgaaattaccttgcatgt-ttaaaagtaattgaatttcaatcaaattgagcag------
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AAATGAACTATACATCAGCGGATCAGCCCCATCCCCGTGGCGAAATATGTGTTAGGGGTCCTATCATTTTTACAGGCTATTACAAAGATGAAATTCAAACgtataaacacctactgcattggaaattcctc---tttcactaaccaaagtgtaccaaaagtttaattatttcagtaaaacgtattattttcag
upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 17
AAATGAACTATACATCTGATGATCAGCCCAATCCCCGTGGTGAAATTTGTGTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGACgtaattacctttcctgttctg-tgcttctaatgaatgaaat-taccttg-catgtttaaaagtaattgaattt-caatcaaattgagcag
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AAATGAACTACACATCTGAGGATCAGCCCTATCCTCGTGGTGAAATCTGTGTTCGGGGTCCCATTCTTTTTCTAGGTTACCATAAAGATGAAGTGCAGACgtacccaccttgcctgttctgctggttcttttgaatgttgtgcattttgtcaaaattggatacatctgattatgtgatcaaattgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10843907|gb|BF067252.1|BF067252EST: GTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGAC GAGAGATGTCATTGATGAAGATGGATGGCTACATACTGGAGATATTGGGAC
genomic: GTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGACgtaattacct ... aattgagcagGAGAGATGTCATTGATGAAGATGGATGGCTACATACTGGAGATATTGGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGAACTATACATCTGATGATCAGCCCAATCCCCGTGGTGAAATTTGTGTCAGGGGTCCCATTGTTTTTCGGGGCTATCACAAAGATGAAGCCCAGACgtaattacctttcctgttctgtgcttctaatgaatgaaattaccttgcatgtttaaaagtaattgaatttcaatcaaattgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC