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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTTACTGGTTTCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgtttaatttatgatgaaagatctataatgcatgttataaactttcataacaaacagcaccattgaaaagtctgaaatttgtttggtaagctt...

Basic information

species Glycine max
transcript GLYMA10G38770.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 14
AGATTTACTGGTTTCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgtttaatttatgatgaaagatctataatgcatgttataa--actttcataacaaacagcaccattgaaa-agtctgaaatt---tgtttggtaagctt
 ||| |  ||||||||||  | ||||| ||||| || ||||||||| | |||||||||||||||||| ||   ||  |  ||||||       |  |||  ||  | |     | |   ||        ||   |||    ||  ||| ||      |||| |||    
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcacta--ctttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937592|gb|BQ081352.1|BQ081352
EST:     TCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAG                         GGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGA
genomic: TCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgt ... atttgaacagGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGA