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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttctacatgctttgcaatttagacaatgttttaattgtgtataaagcaagtatatatgccatgttatcagtatggcaattcagattgtaggtt...

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35190.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 5'ss of exon 18
GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttctacatgctttgcaatttaga--caatgttttaattgtgtataaagcaagtatatatgccatgttatcagtatggcaattcagattgtaggtt
|| || ||||| | |||||| |||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| |||||||||   |||||         ||||| |   ||    |||||  | |  | | |     |     |  ||| | || ||  |       | | |  || |     
GAGAATCTAATTCGTGATGATAACAAACTTATTTTGCTGGCTTCTCTTAGTGATTCATTGGAGTATGTTGCAGACTCAATTGAAAGgcaagtttttatttctgattgcagtcatgaatttatgttagagtgatcttttttaaagtctcacttgcaaagt-atatgggcaaatagtgaagttatgcta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340254|gb|GR858379.1|GR858379
EST:     TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG                         GCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
genomic: TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttc ... aaatttgcagGCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG                         GCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
genomic: TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttc ... aaatttgcagGCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
EST: gi|17963254|gb|BM270005.1|BM270005
EST:     GACTCATTAGAGTATGTTGCAGACTCTATTGAAAG                         GCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
genomic: GACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttc ... aaatttgcagGCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA