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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCAAGACTAAAAATTCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtcatatgacatattttatagtgtcttttattatgtgctgttcgctcctctttctacaccatgtttaggttctctgttggatgcttagaatataaaggcctgtatttgaaatgttattacag

Basic information

species Glycine max
transcript GLYMA09G00580.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207747473|gb|GD721648.1|GD721648
EST:     TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC                         AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: gi|208295200|gb|GE095201.1|GE095201
EST:     TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC                         AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: gi|207815787|gb|GD786992.1|GD786992
EST:     TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC                         AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: gi|193723143|gb|FK660085.1|FK660085
EST:     TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC                         AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: gi|193731483|gb|FK663629.1|FK663629
EST:     TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC                         AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
EST: gi|208295251|gb|GE095224.1|GE095224
EST:     TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAAC                         AAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG
genomic: TCTTGCACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACgtgagtgtca ... gttattacagAAACCTGACACAGAGACAGCGTGAATTAATTGAAGAGTTTGCCAAGGAAGG