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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTCAAAGGACAAAAAGTCCAATGGACCTGATTCTGGCAAAGTCAACCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAGgtaaaattctcttgttgatatggctttcaatggtacatgcacacctttatttcttataaacttctgaaaacattttaattacaatgtgtttctctcttgcag

Basic information

species Glycine max
transcript GLYMA09G00430.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426102|gb|CA937622.1|CA937622
EST:     CCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAG                         CACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
genomic: CCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAGgtaaaattct ... tctcttgcagCACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
EST: gi|9820492|gb|BE556002.1|BE556002
EST:     CCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAG                         CACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
genomic: CCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAGgtaaaattct ... tctcttgcagCACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
EST: gi|15000625|gb|BI321439.1|BI321439
EST:     GTTCCTTATAAAACTGTTTTGAAAG                         CACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
genomic: GTTCCTTATAAAACTGTTTTGAAAGgtaaaattct ... tctcttgcagCACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
EST: gi|5677594|gb|AI938724.1|AI938724
EST:     CCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAG                         CACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT
genomic: CCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAGgtaaaattct ... tctcttgcagCACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAAT