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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTTGAACTTAGATCCAGCTAGCGGCAATACTCTCCCTGCTAGTGGAAAGGGGTCCGTCACACAAAATATGAAAGTTACTAATAGCCAACACGGAAAGgtagattttccttccgtgctacgtaaattttgtgctctatcatgtaccttatgattttatgacggctagcaattattctatttcag

Basic information

species Glycine max
transcript GLYMA08G39930.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 17
TCAGTTGAACTTAGATCCAGCTAGCGGCAATACTCTCCCTGCTAGTGGAAAGGGGTCCGTCACACAAAATATGAAAGTTACTAATAGCCAACACGGAAAGgtagattttccttccgtgctacgtaaattttgtgctctatcat--gtaccttatgattttatgacggctagcaattattctatttcag---------------
||||||| |||||||| |||| || ||||| || || ||||| |||||||| |||||  ||||||||||| ||  ||||||||| |||| ||| || |||||| ||     || |||  |   |||  | |||||||  | |    || |||   | |||||     | |   ||||    | ||||                
TCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGTGGAAATGGGTCTATCACACAAAATTTGCGAGTTACTAACAGCCTACATGGGAAGgtacatga--gttgcgttttctctaatatatgtgctcattaaataatatcttggcaatttatt-ttcccattgattagagcaattcattgaaacaaaagatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452374|gb|BM953784.1|BM953784
EST:     CAAAATATGAAAGTTACTAATAGCCAACACGGAAAG                         AAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAG
genomic: CAAAATATGAAAGTTACTAATAGCCAACACGGAAAGgtagattttc ... tctatttcagAAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAG
EST: gi|31468784|gb|CD410812.1|CD410812
EST:     AGGGGTCCGTCACACNAAATATGAAAGTTACTAATAGCCAACACGGAAAG                         AAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAG
genomic: AGGGGTCCGTCACACAAAATATGAAAGTTACTAATAGCCAACACGGAAAGgtagattttc ... tctatttcagAAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAG
EST: gi|24136213|gb|BU926723.1|BU926723
EST:     GGGGTCCGTCACACAAAATATGAAAGTTACTAATAGCCAACACGGAAAG                         AAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAG
genomic: GGGGTCCGTCACACAAAATATGAAAGTTACTAATAGCCAACACGGAAAGgtagattttc ... tctatttcagAAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAG