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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttcaactttatggaattggtttagatgtttaagttatgaatttctgcttgttattctgaaattactattttctcattgatctaaatctatcttttgacag

Basic information

species Glycine max
transcript GLYMA08G22850.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os04g55230.1 (Oryza sativa), 5'ss of exon 18
ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttcaact-ttatggaattggtt-tagatgtttaagttatgaatttctgcttgttattctgaaattactattttctcattgatctaaatctatcttttgacag
|||| |||||||| || ||||||||||| || |||||||| || || |||||| | |||||||| || || ||||| || ||||| ||  ||||||| |||||||| |  || ||| |   || ||| | ||     ||    |   ||  ||  |  |    || |  |  ||||       ||  | |  ||  |    |     
ATGAAAGAGAGCTAGGTCTTGACCACCCAGAAACTATGAAGAGTTACGGGGATTTATCTGTCTTCTACTACCGTCTCCAGCACATCGAAATGGCTCTAAAgtaagtgctgctattaggtgttttgttgtggaaacacaaaagctagtttcatgact--tggcttgtagctggtattactatcatgcacaatgtcgttacgct-----

upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G086030_T01 (Zea mays), 5'ss of exon 18
ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttcaactttatggaattggtttagatgtttaagttatgaatttctgcttgttatt--ctgaaatta--ctattttctcattgatctaaatctatcttttgacag
|||| || |||||||| ||||| || || || |||||||| || ||||||||| | |||||||| |||||||| || |||||||||||  ||||||| ||||||||     | || |    || |||   |||| |||  |  | |    || ||  ||    |||||  |  ||    |     |  | || ||||| |  |      
ATGAAAGGGAGCTTGGTCTTGATCATCCGGAAACTATGAAGAGTTATGGGGATTTATCTGTCTTCTATTATCGCCTTCAACACATTGAAATGGCTCTAAAgtaagtgtggttatagg----tgttttt--tgttgaagcaaaaagtggtggcatggcatcaattgaaaccaatctgccatggtgctagtttatatctagccatcat---

upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 16
ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttcaactttatggaat----tggtt---tagatgtttaagttatgaatttctgcttgttattctgaaattactattttctcattgatctaaatctatcttttgacag---------------------------------------------------------------------------
|||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||||  |||| ||||| || |||||||||  || | |||   |    | |||   |||   || ||| |  |||  |       ||  | |   |||||  || |||  |||   |  |      | | | |                                                                             
ATGAGAGAGAACTTGGTCTCGACCATCCCGACACTATGAAAAGCTATGGGGATCTTTCTGTATTTTACTATCGTCTTCAACATTTTGAATTGGCACTAAAgtaagttatacatgatgatctcttatagttatatagtcattaaagatg-gaaccttactactttgcttttccattacctttgtcttgttgccttggaatggcttatggtccaaccttttcctctgattggctccttttaaatatatctgccttctttctaaccatttttatttgttatctgttatag

upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 18
ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttcaacttta-tggaattggtttagatgtttaagttatgaatttctgcttgttattctgaaattactattttctcattgatctaaatctatcttttgacag
||||||| || |||||||||||||| ||||| || |||||||||||||| |||||||| || ||||| |||||||| ||||||||||| |||||||||||||||| |  |  |   |||  ||   ||  |  ||| |    | ||  | |    |||  ||  ||||   || ||    |  ||   || |  |  ||       
ATGAGAGGGAACTTGGGCTTGACCATCCTGATACAATGAAAAGCTATGGAGATCTTTCAGTTTTTTACTATCGTCTCCAACACATTGAATTGGCTCTGAAgtaagctagaagtggctggccttctgttctagctttcaaaacttaacattttaaagtttctcgtaaatagttacttaa--aaagagtgaagttcaatttcaa----

upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 17
lower sequence: PP1S73_28V6.1 (Physcomitrella patens), 5'ss of exon 13
ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttc-aactttatggaattggttt----------agatgtttaagttatgaatttctgcttgttattctgaaattactattttc--tcattgatctaaatctatcttttgacag---------------------------------
||||| |||| ||||| ||||||||||| || || |||||||| ||||| |||||  | || ||||| |||||||| |||||||  |||||||| || |||||||||| ||       | |  |||||          |   || |||| |  || | |||    | |  |     |||| |  || |  |  |||| ||  |  |||      |                                    
ATGAGCGAGAACTTGGACTTGACCACCCAGATACCATGAAAAGTTATGGTGATCTGGCAGTATTTTACTATCGTCTTCAACACACCGAGTTGGCACTTAAgtaagttctaatacccaagcacaggtttctttttggagaatggtctaagatcagagtgtctttgagatcgttaatgattagttgttccgatttttgaactggaattatacgggaaggactgccgctcaatttttattttgttggaatgcag

upper sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 17
lower sequence: EFJ24726 (Selaginella moellendorffii), 5'ss of exon 18
ATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAgtaagttcaactttatggaattggtttagatgtttaagttatgaatttctgcttgttattctgaaattactattttctcattgatctaaatctatcttttgacag
||||||| |||||||| |||||||| || || || |||||||||||||| ||  |  |||||||||| ||  | || ||||| |  ||||||||  | | ||||  |     || |  || | || ||     |||| || |||  |                                                          
ATGAGAGGGAGCTTGGACTTGACCATCCGGATACAATGAAAAGCTATGGTGACTTGGCTGTCTTTTACTACAGGCTTCAACATACAGAGTTGGCATTAAGgtaaagttgctctttt--aagtagtgtactctattaacttctgaggtcag-------------------------------------------------------