Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaatagttttttaattagatgctgcaaatggtgaatattagccaatataagtcagaagtcaccatcaaaa...
Basic information
species | Glycine max |
transcript | GLYMA07G30150.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 17
TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaatagttttttaattagatgctgcaaatggtgaatattagccaatataagtcagaagtcaccatcaaaa----
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GCTTGAAATAGCGATCACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTAATACCAAAAGCAGTTATGCATTTCTTGgtatgtgattcatatccgattgtcctttcggtatgcaatctttgt--gctatttttaatggc--atggtaggctttagatgtcggtgctaaagctaaacagcta
upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G180335_T03 (Zea mays), 5'ss of exon 9
TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaatagttttttaattagatgctgcaaatggtgaa-tattagccaatataagtcagaagtcaccatcaaaa
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ACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaatccttgtgctacttttaatggcatggtaggcttagatgtcagt-
upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 17
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 18
TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaatagttttttaattagatgctgca-aatggtgaatattagccaatataagtcagaagtcaccatcaaaa-----------------------------------------
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AGTTGAGATTGAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGAAGAATGTCGAGGACTTGGTCCCAAAAGCAATCATGCATTTTCTGgttagt-gttccactcttctagtcttc------tgattgtctagccaaacatcttatggtcattgatgacacttagtgtgggtcg--attctttgtgaggggactaataactctattccatataattgtgaataaaacacag
upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 18
TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaat--agttttttaattagatgctgcaaatggtgaatattagccaatataagtcagaagtcaccatcaaaa
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AATTGAAATTTCAGTCACTAAACTGCTGCTACGATCATATTATGACATTGTCAGGAAGAATATTGAGGATGCTGTACCTAAAGCCATCATGCACTTCCTGgtaatt-gttttaatcctatctgctcaccattttctgttcttttcttttcatgttctgttatacctaaaaaaaatgttgaagttcatgagatcctgctgta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13790655|gb|BG653246.1|BG653246EST: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTG GTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
genomic: TCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgta ... tgataactagGTAAACAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaatagttttttaattagatgctgcaaatggtgaatattagccaatataagtcagaagtcaccatcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA