Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTTAAGTTTGATTGAATACAAGACACTAGTCATGCGCGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGTATCATAACAGgtagtagttattttcttttatgttattacagaatgacctttactttcattatttagaaattatgtttgatatgttttgagaaaggcttttttgtaaggga...

Basic information

species Glycine max
transcript GLYMA07G03890.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 21
TACTTTTAAGTTTGATTGAATACAAGACACTAGTCATGCGCGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGTATCATAACAGgtagtagt---tattttcttttatgttat---tacagaatgacctttactttcattatttagaaattatgtttgatatgttttgagaaaggcttttttgtaaggga----------------------------------------------------
||||||||||||||||||| |||||||| || || ||||| || |||||||||  ||| |||||| |  |||| ||||||||||| ||| | ||||| |||||  ||    |  ||||  |    ||||   |||||  ||   | |  | | | ||   |   ||      | | ||  |     |||   ||||    ||   |                                                    
TACTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGAAGTCTTACCTTCAATTCCTAAGGAGCACCATAATAGgtatgagaatgtgctttccctcgcattatggttacagc-tggattatggtgttagtaaacatgtatccaaggtcacataatggtttaaattgttttcctaaattcacgcattcctacttttctgattctcgacttcaaaatcctgttcgttttgtcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 17
TACTTTTAAGTTTGATTGAATACAAGACACTAGTCATGCGCGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGTATCATAACAGgta----gtag-ttattttcttttatgttattacagaatgacctttactttcattatttagaaattatgtttgatatgttttgagaaaggcttttttgtaaggga
| ||  | ||  |||||||||||||||| || || ||||| || |||||||| || |||||| ||||| ||||  |||||||||||||| | ||||||| |||     ||| |||||||  | ||  || ||    | | || | || || |||| ||||  |  |   |||  ||| | |||      ||| | |  || |   
TGCTGCTTAGCCTGATTGAATACAAGACTCTTGTGATGCGAGGCGATTTGGATAGAGCCAATCAAATTTTACCTACAATTCCTAAAGAGCAGCATAACAAgtatgttataggttattttggtctaaatt-ttttgcattcacttataatt-cattctttacta-ctgcattt--tatctcttgttgcctgctatgtcctatgaat

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 17
TACTTTTAAGTTTGATTGAATACAAGACACTAGTCATGCGCGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGTATCATAACAGgtag-------tagttattttcttttatgttattacagaat--gacctttactttcattatttagaaattatgtttgatatgttttgagaaaggcttttttgtaaggga
||||| | ||||||||||| |||||||| || || ||||| |||||  ||||| ||||||||||| || |||| |||||||| |||||  ||||||| |||||          |||   |  |  ||    |    | |||  ||     ||  | |  || ||| | ||   | |   |||||||| |      ||| |         
TACTTCTCAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACCTGGAACGGGCCAATGAACTTTTACCTTCAATTCCCAAAGAACATCATAATAGgtaaatttctactgttggctgttggtaaacaacagtaaaataagaggcaaacacttacaatgtagtatttggatctt-catgttttgtggggaattttgta--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341657|gb|GR852794.1|GR852794
EST:     GAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGTATCATAACAG                         TGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAG-ATGCTCT-GAAGT
genomic: GAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGTATCATAACAGgtagtagtta ... tttacactagTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGT