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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATATATACACTAATGGACCGGAGCGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTCGGTCTGGGTCTTCTATATCTTGGAAAGCAGgtaaacagatgtctggcaatctattgtctctgctttttgaatcatagattattttcttttcaattcattaatcttctttaatttctgaataacaattgatagtgagtagggttctgctattgttaaggtgtaatattcactctttacattgtgctttgttactgcag

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os06g48640.3 (Oryza sativa), 5'ss of exon 17
AATTATATATACACTAATGGACCGGAGCGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTCGGTCTGGGTCTTCTATATCTTGGAAAGCAGgtaaacagat-gtctggcaatctattgtctctgctttttgaatcatagattattttcttttcaattcattaatcttctttaatttctgaataacaattgatagtgagtagggttctgctattgttaaggtgtaatattcactctttacattgtgctttgttactgcag
||| ||||      ||||||| || || ||  ||||| | | ||||||  |||  ||  |  | ||| | |  || || |||||||||||||||||||||||||   ||| || |    ||  ||  || |   || |  | | ||       ||| | || |  |||   | | | |   |  | |||| |   ||| |  |||  |                                                            
AATCATATGCGTCTTAATGGAGCGTAGTGAACCAGAGCTTGCAGAGCCAATTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgattgtatacttattcatactcccaaattctacatttatg------tttttattgaggtcaaggaccgtatagtacatatgaacat--atttactgtgcat------------------------------------------------------------

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os09g15750.1 (Oryza sativa), 5'ss of exon 17
AATTATATATACACTAATGGACCGGAGCGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTCGGTCTGGGTCTTCTATATCTTGGAAAGCAGgtaaacaga-tgtctggcaatctattgtctctgctttttgaatcatagattattttcttttcaattcattaatcttctttaatttctgaataacaattgatagtgagtagggttctgctattgttaaggtgtaatattcactctttacattgtgctttgttactgcag
||| |||| |    ||||||| |  || ||| ||||| | | ||||||  ||| |||  |  | ||| | |  || || |||||||||||||||||||||||||   || ||| |    ||  ||  || |   || |  | | ||       ||| | || |  |||   | | | |   |  | |||| |   ||| |   |                                                                
AATCATATGTGTCTTAATGGAGCATAGTGAGCCAGAGCTTGCAGAGCCAATTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgactgtatacttattcatactcccaaattctacatttatg------tttttattgaggtcaaggaccatatagtacatatgaacac--attaactatacaa------------------------------------------------------------