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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGgtgcaggcccaatctcttgtgaaaaatagtttttattccataatggtttgctattattaatctttcttatctgtgaatgaag

Basic information

species Glycine max
transcript GLYMA06G21970.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G21970.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os03g11470.1 (Oryza sativa), 5'ss of exon 15
AGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGgtgcaggcccaatctcttgtgaaaaatagtttttattccata-atggtt---tgctattattaatctttcttat-ctgtgaatgaag
||||||||| |||||||| || |||||||| |  ||||||||||| || ||||| ||||| || || ||||| ||||||||||| ||||| || || |||||| | ||      | || || |   |  | |||| |  ||| || | |   ||||||  |  |  |||  | | || | | |  ||
AGCATATGCAGCAATATGTACTCATTCACCAGACAAACCAGTTCTGATTTTTGTATCATCTCGTCGGCAGACTAGACTTACTGCTCTTGATCTCATCCAGgtggatgc------tgttttggattcttttatttaatggatatatagataactgctatcttatacatttactgtactcttattacag

upper sequence: GLYMA06G21970.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv17s0000g07230.t01 (Vitis vinifera), 5'ss of exon 22
AGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGgtgcaggcc--caatctcttgtgaaaaatagtttttattccataat---ggtttgctattattaatctttcttatc-tgtgaatgaag
|||||||||||| || ||||| ||||| |||   |||||||||||||||||||| ||||| || ||||||||||| ||||||||||| || || |||||||||    |   ||| |  ||  |||||  | || || |  ||   |   |  || |  || ||  | |||||| |  ||| | |||||
AGCATATGCTGCCATTTGCACCCATTCTCCTATGAAACCAGTTCTTATATTTGTTTCATCTCGTCGCCAGACAAGGCTTACTGCACTAGATCTTATTCAGgtgacatcaaacaaccagttaggaaaataaattgttctgtcactgttgagacttacagttcttgttttttctttttatgtaattgaag