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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCATCCCAAGCCAGGAGAATCCTTGAGGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctcttttctttctctagttatatgattctcttataacttcccatgtaaaatcatattatctttggtaatttgatttgttttatgaacctag...

Basic information

species Glycine max
transcript GLYMA06G18170.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 15
GTTGCATCCCAAGCCAGGAGAATCCTTGAGGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctcttttctttctctagttatatgattctct--tataacttcccatgtaaaatcatattatctttggtaatttgatttgttttatgaacctag
             || ||||||||  |||| |||||||||| | | ||||||||||| ||||||||||| ||| |||| || ||||||||||||||||| ||  |||| |  || ||    |    | || || |   ||  |||| | |||    ||||| | | ||   |   |||||    |       | |       
-------------CCTGGAGAATCACTGAGAGATTTCTACAAGAGGACAAATATGTACTGGCAAATGGCTGCCTATGAGCACACTCAACACACTGGAAAGgttagtttccatttctcgaatttccatcat-tggtcagctagtatatcatccttaataaaa-cgtgttgcat---gtaatcctgtacacccaacggcag---

upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 17
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
GTTGCATCCCAAGCCAGGAGAATCCTTGAGGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttt--tctcttttctttctctagttatatgattctcttataacttcccatgtaaaatcatattatctttggta--atttgatttgttttatgaacctag--
             || |||||| | |||| ||||||||| | ||| ||||||||||| ||||||||||| ||| | || ||||| ||||| ||||| || ||| | ||  ||| | |  ||     |   |||| ||   || |||  ||   | | ||  |  |  | || |||| |  || |||||    |  ||    |    
-------------CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatga-ctcata--tttgta-gcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag

upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
GTTGCATCCCAAGCCAGGAGAATCCTTGAGGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctcttttctttctctagttatatg-attctcttataacttcccatgtaaaatcatattatctttggtaatttgatttgtttta-tgaacctag
             || |||||| |||||| ||| ||||| | |||||| ||| |||| |||||||||||||| ||||| || ||||||||||||||||| ||  |||      |||   | |    |  ||   ||| |  | |     | | |||  | |  | ||   |||| |      ||   ||    ||||  || 
-------------CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacattttgctctcttagctcttgttca-ttgtcttcaatttgcttgaccaatcaattgaggtgaaggta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207786163|gb|GD758346.1|GD758346
EST:     ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAA                         GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
genomic: ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttc ... tgggttatagGAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA