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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag

Basic information

species Glycine max
transcript GLYMA06G17300.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 15
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||  | | || || || ||||||||| |||||||||| || ||| | ||||| ||||| || || || ||| | ||||| |||||||||||||| || ||||| ||  |        ||||       ||  |    ||  |  || || |  |||  || | ||  |   | | |||||| |  | |   |    || ||     | ||           
TGGTGCAGCAGAGCCTGACTGGGCATCCCTAAACCTTGGAATTCTTCTATGCATCGAATGCTCTGGGGTACACAGAAATCTCGGTGTGCATATATCTAAGgtaagcaagcgc-------tattctcatcaattttcacatgcaaaaaagttca--ttg--cacaatcgaggcat-tgttggttctatattcagattttatgttagggtttaa-----------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 15
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgt-tttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||      || || ||||||||||| ||||||||||||   ||| | ||||| || ||||| || || ||||| |||||||| |||||||||||||| ||||  |    |  ||  |   ||||   | |   ||||   |   | |||     | || ||  || ||    |  |||| ||| |  ||| |    | | |||                   
TGGTGCTTTGGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACCGAAATCTTGGAGTGCATATATCAAAGgtaaccacgaaaattttaactgttaattctttttaataga--tgctagtttc----tcttgatggtcatgcacatagattgatttctgcattcatt-tattctttga-----------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G117329_T01 (Zea mays), 5'ss of exon 1
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||    | || || ||||||||||| ||||||||||||   ||| | ||||| || ||||| || || ||| | |||||||| |||||||||||||| |||  ||    |  ||   || ||   ||| |  || |      |  | | |   || |    ||  |  |    ||||| ||| |  ||| |    | | |||| |||              
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctt---taattgttattcttttaaa------tggactcttgtttctcttgatggtcatgcaatattgatttctgcattcatt-tattctttaaagtc-------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: AC226227.2_FGT007 (Zea mays), 5'ss of exon 1
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||    | || || ||||||||||| |||||||||||||  ||| | ||||| || ||||| || || |||   |||||||| |||||||||||||| |||  ||    |  ||  |   ||||   | |   ||||        | | |   || |    ||  |  |    ||||  ||| |  ||| |    | | |||  |||              
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCACACTTCTATGCATAGAGTGTTCTGGGGTGCACATAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctttaactgttaattcttttaaatag--------actcttgtttctcttgatggtcatgcaatatttatttctgcattcatt-tattctttgaagt--------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G052235_T02 (Zea mays), 5'ss of exon 4
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||    | || || ||||||||||| ||||||||||||   ||| | ||||| || ||||| || || ||| | |||||||| |||||||||||||| |||  ||    |  ||  |   ||||   | |   ||||        | | |   ||      ||  |  |    ||||  ||| |  ||| |    | | |||  |||              
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTACACAGAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctttaactgttaattcttttaaatag--------actcttgtttcccttgatggtcatgcaatatttatttctgcattcatt-tattctttgaagt--------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G059994_T01 (Zea mays), 5'ss of exon 9
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||    | || || ||||||||||| ||||||||||||   ||| | ||||| || ||||| || || ||| | |||||||| |||||||||||||| |||  ||    |  ||  |   ||||   | |   ||||        | | |   ||      ||  |  |    ||||  ||| |  ||| |    | | |||  |||              
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctttaactgttaattcttttaaatag--------actcttgtttcccttgatggtcatgcaatatttatttctgcattcatt-tattctttgaagt--------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G090752_T01 (Zea mays), 5'ss of exon 3
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||    | || || ||||||||||| ||||||||||||   ||| | ||||| || ||||| || || ||| | |||||||| |||||||||||||  |||  ||    |  ||  |   ||||   | |   ||||        | | |   || |    ||  |  |    ||||  ||| |  ||| |    | | |||  |||              
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAATGgtatctacaaaacctttaactgttaactcttttaaatag--------actcttgtttctcttgatggtcatgcaatatttatttctgcattcatt-tattctttgaagt--------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 15
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAgtaagtaattgaggttacatatttaagattatgctatagtgttatcaattttaagttgttcatattcttgttttctattggtttttaaattgaacacaatatttatagtgaatttatgtatag
||||  |||||| || ||||||||||||||||| || ||  | ||||| ||||| ||||| || ||  ||||||||||||||||||||||||||||||| |||||| ||  |||||    |||    |   |       | || ||| || ||||   || ||   ||||  |  | |  | |   | |   |  |||    |||                  
TGGTGCACCTGAACCTGATTGGGCATCCTTAAATCTGGGTGTTCTTATCTGCATCGAATGCTCTGGCATTCACCGTAATCTTGGTGTGCATATATCAAAGgtaagttatctaggtt-tgaattgggcaccttagc----tcttttcatttgtaag--attgatccacttgggtgttttaagataaaagaacaagaacaggcattagg----------------