1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
CAGAAGAAAGCAAGATGACACTCCTGTTGATAACACTGAGCATGAGCCATTTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGgtagattggagaaaattgttgttcatgttggtgaatgtttgtaagctaatacttaaacaacatagctatgtctctgttatttattatatgttaatgttaa...
species | Glycine max |
transcript | GLYMA06G13330.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAG AGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCATEST: gi|207805892|gb|GD777809.1|GD777809
genomic: GCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGgtagattgga ... ctttttgtagAGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCAT
EST: TTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAG AGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCATEST: gi|27808927|gb|CB063349.1|CB063349
genomic: TTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGgtagattgga ... ctttttgtagAGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCAT
EST: TTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAG AGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCATEST: gi|208082771|gb|GD880441.1|GD880441
genomic: TTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGgtagattgga ... ctttttgtagAGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCAT
EST: TTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAG AGAGCAGCAGATGAAG
genomic: TTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGgtagattgga ... ctttttgtagAGAGCAGCAGATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAGAAAGCAAGATGACACTCCTGTTGATAACACTGAGCATGAGCCATTTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGgtagattggagaaaattgttgttcatgttggtgaatgtttgtaagctaatacttaaacaacatagctatgtctctgttatttattatatgttaatgttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaaa