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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgttttgtttatcgattttggggaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag

Basic information

species Glycine max
transcript GLYMA06G09360.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 5'ss of exon 17
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgttttgtttatcgattttggggaacttaattttatgcacagatgcactttagacatatgccttac-tttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag
  ||||||| |||||||  |||   |||||||||||||||||||| |||||||||||  | || || | ||||| | | || || ||||| ||||||||||| |  |||   ||| ||        ||| |  ||    || |    | |  |  | |  ||||   || | |  || | || |  |  |||                               
CCAAAGGTTTCCAATGTGCTTGATCTTTGGAGGTGATGGAAGTTACATGGCTCCATTTTCACTCCATAGTGATAGTGTACTCACTAGCCTTATGAGTCAGgtatgattttaagatctt------tctaactgcat---tagttatgttctgaagctttttcttatacttctataacactattttaaacattacag----------------------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 15
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgttttgtttatcgattttggggaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag
| ||||||| |||||||||||    |||||||| ||||||||||| |||||||||||  | ||||||| ||| | | |  | || || || || ||||||||||         ||| ||    | || |   | | |   |||   |  ||     |    | | |||       |||   ||  ||  | |  ||||   |||                  
TCAAAGGTTGCCAATGTCATTAATCTTTGGAGGCGATGGAAGTTACATGGCTCCATTTTCACTTCACAGTGACAGTGTGGTCACAAGTCTTATTAGTCAGgttt---------attctgaaacatttcaagctgtac-tggat---cactaagtgaacaattcatttt-------attagcatataacatgaacatatttttacag----------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 10
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgtt--ttgtttatcgattttggg-gaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag
| ||||||| ||||||||  ||   ||||||||||||||||| ||||||||||||||  | ||||| |  || |   |  | || |  || || |||||||||  || || |||  ||  |   | ||| || ||  || |   |  || ||     ||   |   |||| ||  ||  || |||| |                                     
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGCTATATGGCTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaatt-----attctctcaacttattactctctt-ttatag-------------------------------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G412234_T01 (Zea mays), 5'ss of exon 7
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgttttgtttatcgattttggggaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag
| ||||||| ||||||||  ||   |||||||||||||||||||| |||||||| ||  | ||| | | ||| | | | ||||| || || ||||| ||||| | ||||   ||| ||    || | || | |         | ||||||                                                                        
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGTTACATGGCTCCGTTTTCACTTAATAGTGACAGTGTGCTTACTAGTCTTATGAGCCAGgtatcgttttaagatctttca-aattgaactgttcatgtccttacactttttctcag-----------------------------------------------------------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
lower sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 17
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgttttgtttatcgattttggggaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag
  ||||||| |||||| |  |    ||||| |||||||| ||||| |||||||| ||| | ||||| ||||| || || |||||||| || ||||||||||||  |||  |   ||   | |||     ||        | ||| |   | |        ||| ||  |||||  | | |    |                                     
CCAAAGGTTTCCAATGCCCATATTGTTTGGTGGTGATGGCAGTTACATGGCTCCTTTCTCACTTCAAAATGACAACATTCTTACCAGTCTGATGAGTCAGgttg-gttccttagttaacgagaagcagtttcagcagttaaatgaaaggttgtatcgattctttctcattgttttactttctcag-------------------------------------