Sequence
atgc intronic sequence ATGC exonic sequenceTGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAgtaagttcttaccatatttcctcttcacttttcccctggatctgttgatcttgactgtatgtactaggtgtttccttttggctacttattgtgctttggcatgtgattcttttgacag
Basic information
species | Glycine max |
transcript | GLYMA05G34180.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G373175_T01 (Zea mays), 5'ss of exon 17
TGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAgtaagttcttaccatatttcctcttcacttttcccctggatctgttgatcttgactgtatgt-actaggtgtttccttttggctacttattgtgctttggcatgtgattcttttgacag
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TGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTATATCTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct--tgcattgcttgtacaggaaatctttt--tttttcagatttgaaaatgtatcattgcataataatttgtgcatgct-gtag---------------------------
upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 16
TGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAgtaagtt-cttaccatatttcctcttcacttttcccctggatctgttgatctt---gactgtatgtactaggtgtttccttttggctacttat------tgtgctttggcatg--tgattcttttgacag
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TGAAAAGGTGAAGGTGAATTCAGTTTTCCTCCGTGATTCCACTGCTGTATCTGATTCTATGCTTCTTTTATTTGGAGGACGTATTTCCAGAGGGGGAATTgtaagtttcttatcccacttatt-tgcagtattcctaggatgatacctcctttcaagaagatgattcctaaaaatatatttcaaattagttatatgccacattcgctagaatgatttcttgctttggtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193603938|gb|FK559757.1|FK559757EST: CTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTA GATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCA
genomic: CTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAgtaagttctt ... cttttgacagGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAgtaagttcttaccatatttcctcttcacttttcccctggatctgttgatcttgactgtatgtactaggtgtttccttttggctacttattgtgctttggcatgtgattcttttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA