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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATTTTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAGgtataatgtctagttatttaggttcagtagtatgcttactgttgcaagaatgacaaggcatgggtttcttattcatgtctgaaaatatgagatattcttcacgtgcttaaccatgctag

Basic information

species Glycine max
transcript GLYMA05G27890.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 17
ATGCATTTTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAGgtataatgtctagttatttaggttcagtagtatgcttactgttgcaagaatgacaaggcatgggtttcttattcatgtctgaaaatatgagatattcttcacgtgcttaaccatgctag
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ATGCACCTTGATAAGGCACATGGAGCTTATTTTGATTTTGGAAATCATACAGAGAAGgtatgcttctgatacatttttgttcctt--tcaggatattgtagta------------catttattttgtgg-cgtaccaatataaactaagcatacact--gtggtccaccatgtt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408234|gb|EV278042.1|EV278042
EST:     TTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAG                         ATTCAACTTAAATGGAAAGAAGTGGAGATAGGACACAATCATACTGCT
genomic: TTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAGgtataatgtc ... accatgctagATTCAACTTAAATGGAAAGAAGTGGAGATAGGACACAATCATACTGCT
EST: gi|192323951|gb|FK018657.1|FK018657
EST:     TTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAG                         ATTCAACTTAAATGGAAAGAAGTGGAGATAGGACACAATCATACTGCTCGC
genomic: TTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAGgtataatgtc ... accatgctagATTCAACTTAAATGGAAAGAAGTGGAGATAGGACACAATCATACTGCTCGC