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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGgtatgcttttctccatgccttaaacatttgaatctcatttatattattgaaaggtgacaaccttgtttattcgtgtttgattccatgttttag

Basic information

species Glycine max
transcript GLYMA04G36700.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 17
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 17
CACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGgtatgcttttctccatgcctta--aacatttgaa-tctcatttatattattgaaaggtgacaac---cttgtttattcgtgtttgattccatgttttag
|||| || || ||||| || ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||| |||||||| |||||| ||||||| | | ||| ||  |||  ||| | |||| | | |   |  |   | |   |||  ||    ||   || || || | || || | | |   ||
CACATAGTTCTAAAAGTTACTATGCTTGTGTTGGAGAGAGTACTCATGCTTATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtatttccttgtattattaacctctgaaatatgaaggaactctcttatttgtgctaaattactcacttgtttgt-tatgtttgcctctcacag

upper sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 17
lower sequence: Vv14s0068g00840.t01 (Vitis vinifera), 5'ss of exon 10
CACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGgtatgcttttctccatgccttaaacatttgaatctcatttatattattgaaaggtgacaaccttgttt---attcgtgtttgattccatgttttag-----------
||    |  | |||||||||||||| ||| ||||||||||||||| ||| || |||||||| || ||||| || ||  | || || ||| |||||    |||| ||   | | ||| |||  | |||    ||| ||   | |  |   |||    | | |||  |||   |    |  || |    || ||||             
CAAGGGGTGCTAAAAGCTATTATGCCTGTTTTGGGGAGAGCACTCGTGCTTACCAGAGCCCCTCCAAAGATCTCACTACAATTAACAACTGTTTGCGCAGgtacgccact-ttcatacct--accat----atcacaaaaaaaaaaaaaaaaaaaaaaaccctattttcaaacaaattcttaaaaaaatattttgtggaaaataatt