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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagacacgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag

Basic information

species Glycine max
transcript GLYMA04G09230.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 5'ss of exon 17
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagacacgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag
  ||||||| |||||||  |||   |||||||||||||||||||| |||||||||||  | || || |  |||| | | || || ||||| ||||||||||| || || |    | |    ||||  |||   |      |||  || |  |   | | |    || | |  || | || | ||  | |                              
CCAAAGGTTTCCAATGTGCTTGATCTTTGGAGGTGATGGAAGTTACATGGCTCCATTTTCACTCCATAGTGATAGTGTACTCACTAGCCTTATGAGTCAGgtatgattttaagatctttctaactgcattagtt------atgttctgaagctttttcttatacttctataacactattttaaacattacag---------------------------

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 15
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagacacgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag
| ||||||| |||||||||||    |||||||| ||||||||||| |||||||||||  | |||||||  || | | |  | || || || || ||||||||||        ||| |||   | |  |   | | |   ||| |||| ||  |      | | ||| |   |  ||    ||||  || || ||                         
TCAAAGGTTGCCAATGTCATTAATCTTTGGAGGCGATGGAAGTTACATGGCTCCATTTTCACTTCACAGTGACAGTGTGGTCACAAGTCTTATTAGTCAGgttt--------attctgaaacatttcaagctgtac-tggat-cactaagtga-acaattcattttattagcatataacatgaacatatttttacag----------------------

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 10
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagacacgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag
| ||||||| ||||||||  ||   ||||||||||||||||| ||||||||||||||  | ||||| | ||| |   |  | || |  || || |||||||||  ||  ||    ||   ||    | |   ||      ||  |   |   |    |   |||| ||  ||   |||   |                                     
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGCTATATGGCTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaattattctctcaacttattactctcttttatag-------------------------------------

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G412234_T01 (Zea mays), 5'ss of exon 7
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagacacgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag
| ||||||| ||||||||  ||   |||||||||||||||||||| |||||||| ||  | ||| | |  || | | | ||||| || || ||||| ||||| |  || |    | |    || | || | |         | |||||   | |                                                                 
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGTTACATGGCTCCGTTTTCACTTAATAGTGACAGTGTGCTTACTAGTCTTATGAGCCAGgtatcgttttaagatctttcaaattgaactgttcatgtccttacactttttctcag---------------------------------------------------------------

upper sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
lower sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 17
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagaca-cgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag
  ||||||| |||||| |  |    ||||| |||||||| ||||| |||||||| ||| | ||||| || || || || |||||||| || |||||||||||| |||  |   ||     |||     ||        | ||| |       | ||   ||| ||  |||||  | |||                                         
CCAAAGGTTTCCAATGCCCATATTGTTTGGTGGTGATGGCAGTTACATGGCTCCTTTCTCACTTCAAAATGACAACATTCTTACCAGTCTGATGAGTCAGgttggttccttagttaacgagaagcagtttcagcagttaaatgaaaggttgtatcgattctttctcattgttttactttctcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193317379|gb|FK282815.1|FK282815
EST:     CTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAG                         TCAGTGCAACCTACAACCTGGTACAGATTGGTTGCTGGGCTGAAC
genomic: CTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttat ... ttgtttgcagTCAGTGCAACCTACAACCTGGTACAGATTGGTTGCTGGGCTGAAC