Sequence
atgc intronic sequence ATGC exonic sequenceAGGAATCTGGTCAGTCTCCAAGGCTACTCATTGTCTCCATACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGgtaagttcaagccttggcttgaaagatgctagatgtactctgttgcatgcaactttggtgtacaaactatctactatgtacattcaaccttgcattgttt...
Basic information
species | Glycine max |
transcript | GLYMA04G05910.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G05910.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os02g53720.1 (Oryza sativa), 5'ss of exon 4
AGGAATCTGGTCAGTCTCCAAGGCTACTCATTGTCTCCATACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGgtaagttcaagccttggcttgaaagatgctagatgtactctgttgcatgcaactttggtgtacaaactatctactatgtacattcaaccttgcattgttt--
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CGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGgtaagt--gaattttacatggcaaacaaatacataggaactgtaagcagaatagttggtatttagaacgattgttcttctggtttgtatagccgttgcctgt
upper sequence: GLYMA04G05910.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 25
AGGAATCTGGTCAGTCTCCAAGGCTACTCATTGTCTCCATACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGgtaagttcaagccttggcttgaaagatgctagatgtactctgttgcatgcaactttggtgt-acaaactatctactatgtacattcaaccttgcattgttt------------
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AGGAATCTGGTCTGTCTACAAGGATATTCCCTGTCCCCTTCTGGGAACCTACTCTTCTATGACTACATGGAAAATGGCAGTCTCTGGGATCTACTTCATGgtaagtttaaacttt--cctgaacaatatg----gtgctctg-------caagtctgatctgaaaaaatatttatcacttaaatgggtgctaaatgtgtgtcaagaagtgtgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193341941|gb|FK308945.1|FK308945EST: TCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATG GACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCAC
genomic: TCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGgtaagttcaa ... ttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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AGGAATCTGGTCAGTCTCCAAGGCTACTCATTGTCTCCATACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGgtaagttcaagccttggcttgaaagatgctagatgtactctgttgcatgcaactttggtgtacaaactatctactatgtacattcaaccttgcattgttt
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