Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgactagttttataaataattcccacttgcatttagaagattgagatgctaacccaattcatataattggatatcttttttcag

Basic information

species Glycine max
transcript GLYMA04G03710.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 17
TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgact--agttttataaataattcccacttgcatttagaagattgagatgc-taacccaattcatataattg--gatatctt--ttttcag-------
||||||||| || || || ||||||||||||||||| ||||||||||| ||||   | |||  |||  | |||||  | ||||| |  ||||||||| | ||  ||| |   ||||    |  |  | |    ||  || ||       ||||| | ||  | |  |  | | |||   |   ||||  |||||         
TACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGgttagtgccctcagttcaggatgtgctgctatattatatctatgtagaagagatccatagtctatctactctcattaatgtcgtcttaattttccatttccag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 17
TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgactagtttta---taaataattcccacttgc-atttagaa--gattgagatgctaacc-caattcatataattggatatcttttttcag-------
|||||| || || || ||||| |||||||||||||| ||||||||||| ||||   | |||| |||  | || ||  | |||||  | ||||||||||| ||  ||  |    || |   |||     ||    |  | ||| |  |  |  |||  | ||  || |   |  |  |  |   ||| | || ||         
TACAGAGCGTTACCTTTCTGGACAGAAAGCTGATGCTGCAGGATTTGTTCGCAAACTACTTGATGACTTGGAATCAAGAATATCAGTACAGTTCAGCCGGgttagttcccttgttgagcctaagctgctcggtgtgactattcattacgggctgattttctgtccactgcttgttcagatctttatttcttctctcttttcag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 17
TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgactagttttataaataattcccacttgcatttagaagattgagatgctaacccaattcatataattggatatcttttttcag
    ||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||||  |  | |||||||| ||||||||||||          |  |  | |  ||     |||    | | | |     || |  ||  |||  ||  || | ||  | |   | |||
---TGAACGTTATCTATCTGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAGTTTCTATGCAATTCAGCCGTGTAgtccgtctactcaaagattgtttagtttttgttcctggcatacc---attcctact-aatcaattcaagttgac-tttaactgcag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 17
TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgactagttttataaataattcccacttgcatttagaagattgagatgctaacccaattcatataattggatatcttttttcag
 || ||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||||  | || |||||||| ||||||| ||||          |     | |  ||     |||    | | | |     || |  ||  |||  ||  || | ||  | |   | |||
AACCGAACGTTATCTATCTGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAATTTCTATGCAATTCAGCCATgtagtccgtctactcagagattgtttagtttttgttcctggcatacc---attcctact-aatcaattcaagttgac-tttaactgcag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G47550.1 (Arabidopsis thaliana), 5'ss of exon 17
TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgactagttttataaataattcccacttgcatttagaagattgagatgctaacccaattcatataattggatatcttttttcag
 || ||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||||  |  | |||||||| ||||||||||||          |  |  | |  ||     |||    | | | |     || |  ||  |||  ||  || | ||  | |   | |||
AACTGAACGTTATCTATCTGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAGTTTCTATGCAATTCAGCCGTgtagtccgtctactcaaagattgtttagtttttgttcctggcatacc---attcctact-aatcaattcaagttgac-tttaactgcag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 17
TACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCATTTTGCTTGGTGATCTAGAGTCTCGCATATCTATGCAGTTCAGCCGTgtatgtgactagttttat----aaataattc----ccacttgcatttagaagattgagatgctaacccaattcatataattggatatcttttttcag
||||||||| ||| | |||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||  | || |||||||||||| |||||||| ||   |   |||      ||| |||      | | ||   ||    || ||| |||  | ||| | |  |   |||    ||| ||       
TACAGAACGGTATATTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCCTCTTGCTTGATGATCTGGAGTCAAGAATTTCTATGCAGTTCGGCCGTgtaagtttttgtctttgagctgaaacaatatatggctatttttgttctccaggttgtgatatttacc-agtctaagcaatgaattatgttgcag---