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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTTTTTTGGTTGGATGTGCTTTGCTCCTCGCTTCTCGAATAATAGTGTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAGgtgagttgaccttttctgccagtaaggttgtattgatgggattaatcatatctttctgctgcagcacgtgaataatttgttacttttttccctcaaactggctgggagcttcttctcatgttgttctcttttatttctgacatacttataaggatttctcccataaattgcag

Basic information

species Glycine max
transcript GLYMA04G00530.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984919|gb|BE659027.1|BE659027
EST:     GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAG                         TTGAATCGGGTCGCCACATTTTCAAAGTGTAGGGGAATTTACGGAGCTCTT
genomic: GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAGgtgagttgac ... taaattgcagTTGAATCGGGTCGCCACATTTTCAAAGTGTAGGGGAATTTACGGAGCTCTT
EST: gi|18734677|gb|BM528321.1|BM528321
EST:     GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAG                         TTGAATCGGGTCGCCACATTTTC
genomic: GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAGgtgagttgac ... taaattgcagTTGAATCGGGTCGCCACATTTTC
EST: gi|22933315|gb|BU550454.1|BU550454
EST:     GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAG                         TTGAATCGGGTCGCCACATTTTCAAAGTGTAGGGGAATTTACGGAGCTCTT
genomic: GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAGgtgagttgac ... taaattgcagTTGAATCGGGTCGCCACATTTTCAAAGTGTAGGGGAATTTACGGAGCTCTT
EST: gi|120529051|gb|EH257185.1|EH257185
EST:     GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAG                         TTGAATCGGGTCGCCACATTTTCAAAGTGTAGGGGAATTTACGGAGCTCTT
genomic: GTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAGgtgagttgac ... taaattgcagTTGAATCGGGTCGCCACATTTTCAAAGTGTAGGGGAATTTACGGAGCTCTT