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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcagccacgttcccaaaaaattattttgtaaatatggatggaaaatgtttgtgcattcatgtgtttttatttttgggggcag

Basic information

species Glycine max
transcript GLYMA03G42360.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42360.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G14350.3 (Arabidopsis thaliana), 5'ss of exon 16
TATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcagccacgttcccaaaaaattattttgtaaatatggatggaaaatgtttgtgcattcatgtgtttttatttttgggggcag
 |||||||| ||||  |||||||||||||| ||  | ||||||||||| || ||||| || || || |||||||| |||||||| || |||||||| ||||||   ||| | |  |    | ||  | ||  | | || |   ||| ||  ||  |||  ||   |||  ||||| | |  |   |||
CATTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTATACCCGGTTAAATCCCTCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTCCAGgta--atcatctatatatt-ataatgtgatgatctgaaca--aatgaaatctgaatgtatat---tgttcttttaatct--gttacag

upper sequence: GLYMA03G42360.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G53730.2 (Arabidopsis thaliana), 5'ss of exon 15
TATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcagccacgttcccaaaaaattattttgtaaatatggatggaaaatgtttgtgcattcatgtgtttttatttttgggggcag
 |||||||| || || |||||||||||||| ||  | |||||||| |||||||| || || |||||||||||||| |||||||| ||||| || || ||||||     |   | | || ||||      | ||| ||||       |||| | |||      |  || || ||  || ||    |   
CATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGGCTTTATCCTGTCAAATCCCTTTCTCGATTTGCAGATGTTATCGCTCTCTGTGTCCAGgtaa----actaatggtcacaaatcga-gtcttgcaaattcaa---gaaagtcttttactgattttgggtcttgtttcttaacag---