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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAGCTTCAAGCAGTTGGGGATGGATCTTTTCGATCTGGATTTAAGCCTTGGCAAAAGCTTAGACCTTCTATTGAAATATTGTGCAACAACCAGGCAAgtagtctgttgtctacttgtcttatatgcaatcttatgacagtgcatatagcatggttttctagatgctgatgttgagcaagttcatgctttatttttct...

Basic information

species Glycine max
transcript GLYMA03G40360.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40360.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G05090.2 (Arabidopsis thaliana), 5'ss of exon 17
----TCACAGCTTCAAGCAGTTGGGGATGGATCTTTTCGATCTGGATTTAAGCCTTGGCAAAAGCTTAGACCTTCTATTGAAATATTGTGCAACAACCAGGCAAgtagtctgttgtctacttgtcttatatgcaatcttatgacagtgcatatagcatggttttctagatgctgatgttgagcaagttcatgctttatttttct-----
     | ||||  |        ||  ||||||  || |  |||||||| ||||||||||| || ||||||||||| ||||| || || || || | ||||||||   ||| |   || |    ||  |  |     | | |  | |    | |    |   | | |  |   ||| | ||| | || |  | || | |  || |     
ACAACCTCAGCCACTGTTTTCAGGAAATGGATTGTTACAGTCTGGATTAAAGCCTTGGCAGAAACTTAGACCTTCCATTGAGATCTTATGTAATAGCCAGgcaa---gtcagacttcaagagatccaac-tattgccctgtttctg---gtttcaattaactgtttgcagtatgaggctgaacgagctgtttctctgtgattatttcag

upper sequence: GLYMA03G40360.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 17
-TCACAGCTTCAAGCAGTTGG---GGATGGATCTTTTCGATCTGGATTTAAGCCTTGGCAAAAGCTTAGACCTTCTATTGAAATATTGTGCAACAACCAGGCAAgtag-tctg-ttgtctacttgtcttatatgcaatcttatgacagtgcatatagcatggttttctagatgctgatgttgagcaagttcatgctttatttttct
 ||||||| |  ||| |||||    |||||||| ||  | ||||| || |||||||||||||||||||  || || || || || |||||||| |||||||||||| | | |  |||  |   | |  | |     |||   | ||  |   | ||     || ||  | |   |||  |    ||| ||  |||||  |      
GTCACAGCATTCAGCGGTTGGTGGAGATGGATCCTTCAGGTCTGGGTTGAAGCCTTGGCAAAAGCTTAAGCCCTCAATAGAGATCTTGTGCAATAACCAGgcaagttgatatacttggatgagtataatgttactgatccattcaccttttgt-taaagcagtatttcaaactatgaact---acaactttgtgcttcttgaaa--