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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGATAAACATAATGAAGAGAGAAAGACAATTAGCTTGACCACCAAGAGTAGTGAATTTCTGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAGgttggccttttttgtttttgtattcccattttatctagttttttaagtagaatttctttagttttgagttttattgcctgcaaatttcttttaaattttccactacttctggttcagtatcagtttttttctggaaagttctgattcacttgttttttccccactgtaataatatttgttttag

Basic information

species Glycine max
transcript GLYMA03G37930.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 17
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 16
GGCTGATAAACATAATGAAGAGAGAAAGACAATTAGCTTGACCACCAAGAGTAGTGAATTTCTGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAGgttggccttttttgtttttgtattcccattttatctagttttttaagtagaatttctttagttttgagttttattgcctgcaaatttcttttaaattttccactacttctggttcagtatcagtttttttctggaaagttctgattcacttgttttttccccactgtaataatatttgttttag
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GGCTGGCAAACATAATGAAGAGAGAAAGACAGTCAGTCTAACTGATGAGAGTAGTGAATTTTTGTTTTCAAGCGTCTTTCCTGGAAAATACAGGCTTGAGgttagagttctcagactt-atattgtttctttagaatttattctatgtttgatgcagttccttgttgggaaggtgaatggaaaaaatcatgtgggaaaact-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491323|gb|EH219490.1|EH219490
EST:     GTAGTGAATTTCTGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAG                         GTCAAACATAGTTCCCCTGAATCAGTGACCTTGGAAGATAATTGGTGCTGG
genomic: GTAGTGAATTTCTGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAGgttggccttt ... tttgttttagGTCAAACATAGTTCCCCTGAATCAGTGACCTTGGAAGATAATTGGTGCTGG
EST: gi|16348153|gb|BI973748.1|BI973748
EST:     GTAGTGAATTTCTGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAG                         GTCAAACATAGTTCCCCTGAATCAGTGACCTTGGAAGATAATTGGTGCTGG
genomic: GTAGTGAATTTCTGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAGgttggccttt ... tttgttttagGTCAAACATAGTTCCCCTGAATCAGTGACCTTGGAAGATAATTGGTGCTGG