Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctgtaagtgttgcgttattgtttcaacataagattgttttctgttgacatgagattcatctaacattgtatttag
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os02g51430.2 (Oryza sativa), 5'ss of exon 15
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctg--taagtgttgcgttattgttt----caacataagattgttttctgttgacatgagattcatctaacattgtatttag
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GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGACTTGAGGAACCAGCTTCTGATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaatttttctcgattaaggactgcatgtgagttccctgctactttaatttcatatcatttgacataaaatttgttgagcag---------
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G070045_T01 (Zea mays), 5'ss of exon 11
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctgtaagtgttgcgttattgtttcaacataagattgttttctgttgacatgagattcatc-taacattgtatttag------
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GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGGCTTGAGGAGCCAGCTTCTGATGTTGGTCTGGAATCTCTATGTGCATTGgtatgttcctttctgcttttggacct-cgacgagatgtgaatttcctgccttcctttattccttattatttgatccttatgttgtatgtgggtgcag
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 5'ss of exon 17
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctgtaagtgttgcgttattgtttcaacataagattgttttctgttgacatgagattcatctaacattgtatttag
|| ||||||||||| ||||||||||||||||||||| | || ||||| || ||||| ||||||||||||||| |||| |||||||| || || | | | | | | |||| | ||||| | || || | ||| |||| | ||
GTTATGATTGATTTCCAAGCAGCTGAAAAGAAGAGAGTTGATGAACCTGCATCTGATATTGGTCTGGAACCTCTATGCGCTATGgtatgtcaaaagatatgactcttttgatgacactatttctttctc---ccattttcagacga-atatttatatgttaatattgactacag
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 16
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctgtaagtgttgcgttattgtttcaacataagattgttttctgttgacatgagattcatcta---------acattgtatttag
|| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||||||| |||||| || | | || |||| || | | | || | | || | | || | ||| | || ||||||||| ||
GTAATGATTGATTTTCAAGCAGCTGAAAAGCGAAGACTTGAAGAACCTGCTTCTGAAATTGGTCTGGAATCTTTATGTGCAATGgtttgtct--ctcttaaacaagttccatgtgactctatct-cttggttttctactaaattaagtcaccatttctttactgctattgacattgtatccag
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 16
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctgtaagtgttgcgttattgtttcaacataagattgttttctgttga--catgagattcat-------ctaacattgtatttag
|| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||||||| |||||| || | | || |||| ||| | | | || | | || | | || | || | | | | ||||||||| ||
GTAATGATTGATTTTCAAGCAGCTGAAAAGCGAAGACTTGAAGAACCTGCTTCTGAAATTGGTCTGGAATCTTTATGTGCAATGgtttgtct--ctcttaaacaagttccacgtgactctatct-cttggttttctactaaattaagtcaccaattctttactgctattgacattgtatccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990484|gb|BI316157.1|BI316157EST: GACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATG ATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGC
genomic: GACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaa ... ttgtatttagATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctgtaagtgttgcgttattgtttcaacataagattgttttctgttgacatgagattcatctaacattgtatttag
- - - - - - - - - - - - - - - - - - - - AAGAAC