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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGGAGAACTTTATAAAAAGAAGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGTgtaagcttataataaatatgtgcaaaatattgaaatgatgaatggtttgtgatgtttgtaaatggtgtctag

Basic information

species Glycine max
transcript GLYMA02G39390.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283901|gb|AW596502.1|AW596502
EST:     AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGT                         ATATGGACTAGTACACTGCAGCGAACAATNTTGACAGCAGGTCCAATTGT-
genomic: AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGTgtaagcttat ... tggtgtctagATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTT
EST: gi|193656517|gb|FK605005.1|FK605005
EST:     AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCATGT                         ATATGGACTAGTACNCTGCAG
genomic: AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGTgtaagcttat ... tggtgtctagATATGGACTAGTACACTGCAG
EST: gi|17024057|gb|BM095091.1|BM095091
EST:     AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCATGT                         ATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTT
genomic: AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGTgtaagcttat ... tggtgtctagATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTT
EST: gi|193305438|gb|FK273259.1|FK273259
EST:     AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCATGT                         ATATGGACTAGTACACTGCAGCGAAC
genomic: AGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGTgtaagcttat ... tggtgtctagATATGGACTAGTACACTGCAGCGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGCTGGAGAACTTTATAAAAAGAAGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCGTGTgtaagcttataataaatatgtgcaaaatattgaaatgatgaatggtttgtgatgtttgtaaatggtgtctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC