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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgattacttattcccatcataagttctagtaggtcattttataacacatgttctcacaagaatatatttatttgcag

Basic information

species Glycine max
transcript GLYMA02G00510.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 17
GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgattacttattcccatcataagttctagtaggtcattttataacacatgttctcacaagaatatatttatttgcag
||||||||| |||||||| || || ||||||||||| || |||||||||||||| || || ||||| |||     ||   | |||    |  |  |  |  | |  || |||||     | |||  |  | ||| || |||  ||  ||
GGATGGTGTCAGTGAAGGCCAATTCTACCAAGTTCTCCTCTATGAGTTGGATGCTATCCGCAAGgttagatgcatttgtattttctttactcagatatt--ttgtccactttat----taggttgcctgacgaa-atgttttcttttag

upper sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 17
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgat-tacttattcccatcataagttc--tagtaggtcattt---tataacacatgttctcacaagaatatatttatttgcag
 ||||| ||||| |||||||| || || |||||| |||| |||||||||||||||||||| ||||| | || |  | | | ||  |     || | | |   |  | || |       ||   ||||  ||  | | |  | | | | | |  ||
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaacttttgtgcatag-catgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag

upper sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 15
GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgattacttattcccatcat----aagttctagt---aggtcattttataacacatgtt--ctcacaagaatatat---ttatttgcag----
||||||||| ||||||||||| ||||| ||||| |||||||||||  | |||||||| ||||| || ||  |    |  ||||||  ||  |    |   | || |   |  |||||| | | || ||     | || | |    |||   | ||||  |     
GGATGGTGTTAGTGAAGGGCAATTTTATCAAGTGCTACTTTATGAACTAGATGCAATCCGGAAAgtgagtttcagctttttattcttattttttccattctttaattaaaaatcatttgaaaccaaatagcaacccataggtccttataaataatttctacacag

upper sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 17
lower sequence: EFJ14096 (Selaginella moellendorffii), 5'ss of exon 16
------------------------------------GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtc-agaattgattacttattcccatcataagttctagtaggtcattttataacacatgttctcacaagaatatatttatttgcag
                                     |||||||| || ||||| ||||| ||||||||||| ||| | ||||||||||||||| | |||||  || || ||     |   | |||     | |  ||    || ||||   |||                               
CTCTGGATACAAACCTGGAAGAATCATCTTCTACAGAGATGGTGTGAGCGAAGGACAGTTCTACCAAGTTCTCCTTCACGAGTTGGATGCAATTAGAAAGgtttagtatggaaagacttggcgcattgactgattcagctcttcgttttg-gacag------------------------------

upper sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 17
lower sequence: EFJ14095 (Selaginella moellendorffii), 5'ss of exon 16
------------------------------------GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgt-cagaattgattacttattcccatcataagttctagtaggtcattttataacacatgttctcacaagaatatatttatttgcag
                                     |||||||| || ||||| ||||| ||||||||||| ||| | ||| ||||||||||| | |||||  || || ||     |   | |||     | |  ||    || ||||   |||                               
CTCTGGATACAAACCTGGAAGAATCATCTTCTACAGAGATGGTGTGAGCGAAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatggaaagacttggcacattgactgattcagctcttcgttttg-gacag------------------------------