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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATGCTCGAGCAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttttacttagtttactttgcttatcattattctaatttgttatatttggagtatatgtctgtagcttgataaaatttctcctcaatctaaagt...

Basic information

species Glycine max
transcript GLYMA01G43470.4
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193669681|gb|FK607759.1|FK607759
EST:     AGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|254347181|gb|GR856851.1|GR856851
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG-T                         T-GAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|193424751|gb|FK392042.1|FK392042
EST:     GGAAAAGAA-GT                         TTGTAAAGGTTTTGTAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCAT
genomic: GGAAAAGAAGGTgttttttttt ... tatttggcagTTG-AAAGGTTTTG-AGTTTATAAAAGCAGTTCACCTTGACTCAATTCCAT
EST: gi|58025423|gb|CX712164.1|CX712164
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG-T                         T-GAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|209712294|gb|BW668488.1|BW668488
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|11275038|gb|BF325362.1|BF325362
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG-T                         T-GAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|151396024|gb|EV265901.1|EV265901
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG-T                         T-GAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|208119453|gb|GD917386.1|GD917386
EST:     AAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAAGGAAAAAGAAG-T                         TAGAAAGGTTTTGAGTTTATAAA
genomic: AAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAA-GGAAAA-GAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAA
EST: gi|213605729|gb|DB976168.1|DB976168
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|213606140|gb|DB982441.1|DB982441
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|209713724|gb|BW681864.1|BW681864
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|254347182|gb|GR856852.1|GR856852
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|51342594|gb|CO983564.1|CO983564
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG-T                         T-GAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|19270925|gb|BM887181.1|BM887181
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG-T                         T-GAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|15661796|gb|BI699167.1|BI699167
EST:     AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAA-G-                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATGCTCGAGCAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGGTgttttttttttacttagtttactttgcttatcattattctaatttgttatatttggagtatatgtctgtagcttgataaaatttctcctcaatctaaagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctcctc