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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATGCTCGAGCAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttttttacttagtttactttgcttatcattattctaatttgttatatttggagtatatgtctgtagcttgataaaatttctcctcaatctaaa...

Basic information

species Glycine max
transcript GLYMA01G43470.3
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15661796|gb|BI699167.1|BI699167
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|254347181|gb|GR856851.1|GR856851
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|209712294|gb|BW668488.1|BW668488
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|151396024|gb|EV265901.1|EV265901
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|193424751|gb|FK392042.1|FK392042
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|58025423|gb|CX712164.1|CX712164
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|19270925|gb|BM887181.1|BM887181
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|51342594|gb|CO983564.1|CO983564
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|208119453|gb|GD917386.1|GD917386
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|209713724|gb|BW681864.1|BW681864
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|254347182|gb|GR856852.1|GR856852
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|193669681|gb|FK607759.1|FK607759
EST:     AGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: AGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|11275038|gb|BF325362.1|BF325362
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|213606140|gb|DB982441.1|DB982441
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|213605729|gb|DB976168.1|DB976168
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
EST: gi|209718876|gb|BW669063.1|BW669063
EST:     CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAG                         TTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT
genomic: CAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttt ... tatttggcagTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATGCTCGAGCAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGgtgttttttttttacttagtttactttgcttatcattattctaatttgttatatttggagtatatgtctgtagcttgataaaatttctcctcaatctaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctcctc