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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgtttcattgttaatgttgttaagatttagttagttatgttctctatacatagctgacatactaatcccaaacttgatatccacag

Basic information

species Glycine max
transcript GLYMA01G41140.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os04g10380.1 (Oryza sativa), 5'ss of exon 17
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatc-------ttgtttcattgttaatgttgttaagattta-gttagttatgttctctatacatagc-tgacatactaatcccaaacttgatatccacag
|||||| |||||||||||| ||||||||||||| ||||| ||||| ||| | || ||  | || |||| ||||||| ||||  | ||||| ||||| ||||||         ||   | | |    |||||  | | |||   | |  |       || |   ||| | | |||||  |      |  ||| |   ||   
GAAGAGGTTTCCCATGTGCTTAATTTTTGGTGGTGATGGAAGCTATATGTCTCCATACTACCTACACAGTGATACATTGTTATCTAACCTTCTTGGCCAGgtaaaaataagattaacttaatagggatgttaatgacattcctggtgttccaaacttccaattatatcatcacataggacagttcactttgttccacatt-

upper sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G015291_T01 (Zea mays), 5'ss of exon 9
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgtttcattgttaatgttgttaagattta-gttagttatgttctctatacatagctgacatactaatcccaaacttgatatccacag--------
|||||| |||||||||||  ||||||||||||| ||||| ||||| ||| | || ||  |||| || | ||||||| || |  | || || ||||| ||||||  ||      ||| | ||| |  ||  ||||| ||| |  |  | ||| |     ||   |  |  |  |     |   | |    |           
GAAGAGGTTTCCCATGTGTCTAATTTTTGGTGGTGATGGAAGCTATATGTCCCCATACTATCTACATAGTGATACATTGCTATCAAATCTTCTTGGCCAGgtaaattcagattttgctgatgataataccatttatgtttgggac-tgctccagctccagaaaatttggtgttggtggagcaggtcattaggtgctccaaa

upper sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgtt--tcattgttaatgttgttaagatttagttagttatgttctctatacatagctgacatactaatcccaaacttgatatccacag
||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||||||| ||| ||| ||| | ||||| || || ||||| ||||| | ||      |  | ||| |  ||||    |||   ||| |||      | | |||     ||||  | |        ||| ||| | |||
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttct--tttgaatagctataacaattgttcatt-tcaacattttcactatgtttttg-tatacccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521803|gb|BU080614.1|BU080614
EST:     CACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAG                         CATGTCCCAGCAACTGTTTGGAATCGCTTGGTAGCTGGACTCAATGCTCAG
genomic: CACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgtt ... atatccacagCATGTCCCAGCAACTGTTTGGAATCGCTTGGTAGCTGGACTCAATGCTCAG