Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATATGGAGTTAGAGAAACGCTATCGGGAACTGACTGACCTTTTGgtaatttttcatgattaaatttcatgcaactaacctgtgatattcaataaatttatattttatcttcatttcag

Basic information

species Glycine max
transcript GLYMA01G01230.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01230.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 15
GAGCATATGGAGTTAGAGAAACGCTATCGGGAACTGACTGACCTTTTGgtaattt---ttcatgattaaatttcatgcaactaacctgtgatattcaataaatt---tatattttatcttcatttcag-------------------------------------------
|||||||||||| | ||||||||||| || ||||| |||||||| ||||||  |      ||||||  | ||   |     |||  |    || |   | | ||    ||  | ||    || |  |                                            
GAGCATATGGAGCTGGAGAAACGCTACCGTGAACTAACTGACCTATTGgtatgtcaaacccatgatgtagttatgtattcttaagattgcttaattgctcatttggtcatgctataaggccaataaattgtgttaaattcttagatgcaaaatttattatctatgattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321697|gb|GR825014.1|GR825014
EST:     GAGCATATGGAGTTAGAGAAACGCTATCGGGAACTGACTGACCTTTTG                         TACTACAAACAAACTCAATTAGAAACCATGGTCAGTGAAAAAGCTGCTGCA
genomic: GAGCATATGGAGTTAGAGAAACGCTATCGGGAACTGACTGACCTTTTGgtaatttttc ... ttcatttcagTACTACAAACAAACTCAATTAGAAACCATGGTCAGTGAAAAAGCTGCTGCA
EST: gi|22525698|gb|BU084509.1|BU084509
EST:     GAGCATATGGAGTTAGAGAAACGCTATCGGGAACTGACTGACCTTTTG                         TACTACAAACAAACTCAATTAGAAACCATGGTCAGTGAAAAAGCTGCTGCA
genomic: GAGCATATGGAGTTAGAGAAACGCTATCGGGAACTGACTGACCTTTTGgtaatttttc ... ttcatttcagTACTACAAACAAACTCAATTAGAAACCATGGTCAGTGAAAAAGCTGCTGCA