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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatcaatttccaactacagctgtttgtataaatatactatttctaagttattgacgtggaaaagtacttgaaacatctcactcttttgtttata...

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 16
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatcaatt-tccaactacagct---gtttgtataaatatact--atttctaagttattgacgtggaaaagtacttgaaacatctcactcttttgtttata-
|||||||||||||| | |||||| ||||||||||||| ||||| ||  ||||  ||||  |||| ||| ||||| | |||||||||||||| ||||||||||  |  ||   || |      | | ||   | ||    ||||||  |   ||||| |  | || |  ||| |   |  |||| |    | |  ||||    || | 
GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgggcatattttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 16
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatcaatttccaactacagctgtttgtataaatatactatttctaagttattgacgtggaaaagtacttgaaacat-----ctcactcttttgtttata----
||||||| |||||| | |||||| |||||||||| || ||||||||  ||||  | ||  | || ||||||||||| |||||||||||||| |||||||||| ||| ||  ||| |          | ||   |     | |  || || || ||  | | |   | | || |||    |||      | |  ||    |||       
GGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGgt-tgacat--attccttgtggtgtttattcagaagttcaaaaaatatcaaattttatcatgcc-acatgtgcttttgtcatagatattaatgctaccttttgccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389687|gb|CA852894.1|CA852894
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGCAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|151409608|gb|EV279416.1|EV279416
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|5753691|gb|AI960978.1|AI960978
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA