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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccacaattttccttttctaaagttttcattgatcctaagttgttatgcttgctgtctaacatggaggtaaatttgattatcag

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 15
GAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaa--tgcatatccacaattttcctt-ttctaaagttttcattgatcctaagttgttatgcttg--ctgtctaacat---ggaggtaaatttgat-tatcag
|||||||||||||||||||||||| || |||||||||||||| || ||  || |  | ||||||||| | |  |||| | |||| |  |  | |   |   ||||  |   || |||    | |    || || |||   |  ||||  |   |||||||        | |||||||  |||   
GAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAGgtcagttaaacaatgattgttttattcactccaaataactgaagcctcatatgttccaagtcttgaccacgctaacatttgaagaatgaatttgacgtat---

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 9
GAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccac--aattttccttttctaaagttt---tcattgatcctaagttgttatgcttgctgtctaacatggaggtaaatttgatt--atcag-
|||||||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   ||||| ||||||||||| |||  |||   |  | ||    ||| ||  | |||   |||||   |||  | |  |   | |  | |||  | |    |    | |||||  | ||  
GAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATGCATTTCAGgtgatgtgtattttccgagttgctatttactctaatttacgtcattttccctctgattatcaacattttatcttgcttactag--gttctgattgaaccaat

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 9
GAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccac--aattttccttttctaaagttt---tcattgatcctaagttgttatgcttgctgtctaacatg-gaggtaaatttgatt--atcag-
|||||||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   ||||| ||||||||||| |||  |||   |  | ||    ||| ||  | |||   |||||   |||  | |  ||  | |  | |||  | |  |||||   | |||||  | ||  
GAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATGCATTTCAGgtgatgtgtattttccgagttgctatttactctaatttacttcattttccctctgattataaacattttatcttgcttacgaggt---tctgattgaaccaat

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 5'ss of exon 6
GAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccac--aattttccttttctaaagttt---tcattgatcctaagttgttatgcttgctgtctaacatggaggtaaatttgatt--atcag-
|||||||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   |||||  |||||||||| |||  |||   |  | ||    ||| ||  | |||   |||||   |||  | |  |   | |  | |||  | |    |    | |||||  | ||  
GAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAGgtgatgtgtattttccgagttgctatttactctaatttacgtcattttccctctgattatcaacattttatcttgcttactag--gttctgattgaaccaat