Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTTGAAAAATTTGCACCTCAGTATTTCAAATACCTGATGGATGCCCTCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactgagaactcaagtctttatttgacattttgtatacaggcgccagactggtgtataaatgtaaattttatgtttacaatgtttcttgttttggtggcag

Basic information

species Glycine max
transcript GLYMA20G01680.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 9
GTCCTTTGAAAAATTTGCACCTCAGTATTTCAAATACCTGATGGATGCCCTCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactgagaactcaagtctttatttgacattt-tgtatacaggcgccagactggtgtataaatgtaaattttatgtt--tacaat----gtttcttgttttggtggcag
 || ||||||||||||||||   |||| ||||||||  |||   || | || | ||||||| | |||||||| ||||| ||||||||||||||||||||||| ||  |               || ||||| ||||    ||  ||   |  |  ||||||  ||||   ||| || |  |  |   ||     ||| ||| |    ||||||
TTCTTTTGAAAAATTTGCACACGAGTACTTCAAATATTTGACACATTCTCTTAGCTCAGGAAGCCCAACTTGCCTTGCTAAAATTCTTGGTATTTATCAGgttaggccca-------------ttctttgatatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193422232|gb|FK391469.1|FK391469
EST:     TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATACCCAAAAGGTGGCAAGGAAAC-AAAATAGATCTGATG
genomic: TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
EST: gi|208067622|gb|GD865710.1|GD865710
EST:     TTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATAACCCAAAAGGTGG
genomic: TTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATA-CCCAAAAGGTGG
EST: gi|6724683|gb|AW309016.1|AW309016
EST:     TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
genomic: TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
EST: gi|208052189|gb|GD853474.1|GD853474
EST:     TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
genomic: TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
EST: gi|192324896|gb|FK015377.1|FK015377
EST:     TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
genomic: TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
EST: gi|208125235|gb|GD923695.1|GD923695
EST:     TCAACTCAGGGGGGCCAACTTGTCTTGCCGAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
genomic: TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
EST: gi|193702471|gb|FK640919.1|FK640919
EST:     TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG
genomic: TCAACTCAGGAGGGCCAACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactg ... ttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATG