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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAGAGTACCCTTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgcttcaaagttttccttcattttatctgtttattatagcttttaacaaatttgtcacatcttttgtcttttgtttctctgttctgtacagtatcctgtatatttcttttttctttgttctgactgatgttctttatcttcttctgactctattatgttgtgtattgtaaatcaaag

Basic information

species Glycine max
transcript GLYMA19G38150.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207737872|gb|GD717344.1|GD717344
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAACCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208221529|gb|GE017307.1|GE017307
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208200051|gb|GD996008.1|GD996008
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAAACAAATAAAGGATATCTCTGATCGCTCTCA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAA-CAAATAAAGGATATCTCTGATCGCTCTCA
EST: gi|208293489|gb|GE095129.1|GE095129
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208241286|gb|GE043210.1|GE043210
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTTGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208170060|gb|GD967055.1|GD967055
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208144253|gb|GD941108.1|GD941108
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|207818052|gb|GD793065.1|GD793065
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|207686176|gb|GD670418.1|GD670418
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|6964169|gb|AW432862.1|AW432862
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208242604|gb|GE038802.1|GE038802
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCT
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCT
EST: gi|207781324|gb|GD752685.1|GD752685
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAAATAAAGGAATATCTCTG
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAA-TAAAGGA-TATCTCTG
EST: gi|193431696|gb|FK395202.1|FK395202
EST:     TTCAACTCAGCAGGGTGAATTGGCACTATTTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTCAACTCAGCAGGGTGAATTGGCACTA-TTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208219738|gb|GE016664.1|GE016664
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208298758|gb|GE095065.1|GE095065
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193731155|gb|FK664365.1|FK664365
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208231403|gb|GE034404.1|GE034404
EST:     GGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: GGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208324384|gb|GE120925.1|GE120925
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208327946|gb|GE124624.1|GE124624
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGA
EST: gi|193337102|gb|FK302888.1|FK302888
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208263560|gb|GE063820.1|GE063820
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAA
EST: gi|193381640|gb|FK348939.1|FK348939
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193436734|gb|FK399535.1|FK399535
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208327909|gb|GE119855.1|GE119855
EST:     TTCAACTCAGCAGGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTCAACTCAGCAGGG-TGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|207729786|gb|GD705470.1|GD705470
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGAT
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGAT
EST: gi|208187815|gb|GD983927.1|GD983927
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGG
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGG
EST: gi|193560110|gb|FK518857.1|FK518857
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGG
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGG
EST: gi|208234920|gb|GE029203.1|GE029203
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193376651|gb|FK342316.1|FK342316
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTC
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTC
EST: gi|193732176|gb|FK667948.1|FK667948
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAAACAAATAAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAA-CAAATAAA
EST: gi|208294721|gb|GE093854.1|GE093854
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193685422|gb|FK626638.1|FK626638
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAA
EST: gi|193565715|gb|FK524540.1|FK524540
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTACGAAACAAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCT-CGAA-CAAA
EST: gi|208319868|gb|GE116857.1|GE116857
EST:     TTTCGACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208156476|gb|GD957696.1|GD957696
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATAT
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATAT
EST: gi|207820076|gb|GD789982.1|GD789982
EST:     CAGGGTGAATTGGCACCATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: CAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|207728572|gb|GD707714.1|GD707714
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193312514|gb|FK276522.1|FK276522
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208103076|gb|GD901514.1|GD901514
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGG
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGG
EST: gi|208083687|gb|GD884379.1|GD884379
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|208070414|gb|GD870951.1|GD870951
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193339074|gb|FK304393.1|FK304393
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCTCTGATCGCTCTCAA
EST: gi|193591067|gb|FK546886.1|FK546886
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAACAAATAAAGGATATCT
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAACAAATAAAGGATATCT
EST: gi|207779609|gb|GD752049.1|GD752049
EST:     TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAAT                         AGATTCAATCTCAGCCTCGAAACAAATAAAGGATATCTCTGATCGCTCTCA
genomic: TTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAACTACGCAATgtatgtgctt ... taaatcaaagAGATTCAATCTCAGCCTCGAA-CAAATAAAGGATATCTCTGATCGCTCTCA