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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCTGAATGGTTGGAATCATAGTTGTTATTCATGCACATACTACAGGATTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtaccaaattcggtaatgactttgcttagcattaaatcctgtttggatgtagtctttttctataaaaaatatttgtgttttgtggtgaagggaatg...

Basic information

species Glycine max
transcript GLYMA19G37570.2
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602827|gb|BQ613158.1|BQ613158
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|193571995|gb|FK529152.1|FK529152
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACCGTTTCAATAGTCCCAG                         AGGCACAGTTGTACTATTTCTGTTCTAATTCGGAGTAAGAATACCCTATTT
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTAC-ATTTCTGTTCTAATTCGGAGTAAGAATACCC-ATTT
EST: gi|8285414|gb|BE022973.1|BE022973
EST:     TTTTATTAGTTNTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTGTC
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|208111421|gb|GD909139.1|GD909139
EST:     TAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|15203932|gb|BI426700.1|BI426700
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|208075516|gb|GD877301.1|GD877301
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|193317041|gb|FK281189.1|FK281189
EST:     TTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|208065209|gb|GD867143.1|GD867143
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|208140513|gb|GD939881.1|GD939881
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTTC
EST: gi|208141679|gb|GD940417.1|GD940417
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTT
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTT
EST: gi|208301130|gb|GE098557.1|GE098557
EST:     TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAG                         AGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTT
genomic: TTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtacca ... tcggttgcagAGGCACAGTTGTACATTTCTGTTCTAATTCGGAGTAAGAATACCCATTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACCTGAATGGTTGGAATCATAGTTGTTATTCATGCACATACTACAGGATTTTATTAGTTTTGATGTCTAACAGGAATACACTGTTTCAATAGTCCCAGgtgcgtaccaaattcggtaatgactttgcttagcattaaatcctgtttggatgtagtctttttctataaaaaatatttgtgttttgtggtgaagggaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaata