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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCAAATTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttgttcattcattacactagttttagttttcattaagcctttttctaaatgttttgagcgctcttggcag

Basic information

species Glycine max
transcript GLYMA19G37520.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37520.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv08s0007g03960.t01 (Vitis vinifera), 5'ss of exon 16
GGTCAAATTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttgttcattcattacactagttttagttttcattaagcctttttctaaatgtt-----ttgagcgctcttggcag----------------------------------------------
|||||||||||||| ||||||||||||||||| || || ||||| || || || ||||||    |  ||  | | ||   ||    |   |  || |      |  | ||  | |||     || |   || |    |                                               
GGTCAAATTAAGACAGGAGCTCCATGCAGGTCAGAACGACTTGCAAAGTACAATCAGgttaacatccttgctcctttggccttcactccatcatcttcgtatatagtacttgaagttgcactttcaaaactttgattaagcatggtttgttcaaattatgctaatgttcttttgtactttcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689246|gb|BF596922.1|BF596922
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|151393954|gb|EV263825.1|EV263825
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|15662135|gb|BI699506.1|BI699506
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|6566448|gb|AW234093.1|AW234093
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209713143|gb|BW653852.1|BW653852
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|213592747|gb|DB981279.1|DB981279
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|214007339|gb|DB986930.1|DB986930
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|17023734|gb|BM094768.1|BM094768
EST:     GCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: GCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209728018|gb|BW666740.1|BW666740
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|27425654|gb|CA937174.1|CA937174
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|21889620|gb|BQ742833.1|BQ742833
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209716342|gb|BW676896.1|BW676896
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209725451|gb|BW658304.1|BW658304
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|254315248|gb|GR830241.1|GR830241
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|6502429|gb|AW203802.1|AW203802
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|51335443|gb|CO979309.1|CO979309
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|19935365|gb|BQ080395.1|BQ080395
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|207697644|gb|GD680485.1|GD680485
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTG
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTG
EST: gi|209716492|gb|BW676942.1|BW676942
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|207822899|gb|GD793700.1|GD793700
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|4300358|gb|AI443036.1|AI443036
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|254320730|gb|GR827179.1|GR827179
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|18690784|gb|BM519632.1|BM519632
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209716148|gb|BW662333.1|BW662333
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|17021632|gb|BM092666.1|BM092666
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGT
EST: gi|16348013|gb|BI973608.1|BI973608
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|7285161|gb|AW597648.1|AW597648
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|13481453|gb|BG510796.1|BG510796
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTATGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|21888828|gb|BQ742041.1|BQ742041
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209703742|gb|BW656875.1|BW656875
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|58024814|gb|CX711555.1|CX711555
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|4302667|gb|AI443366.1|AI443366
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|120491912|gb|EH220079.1|EH220079
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|192332025|gb|FK026319.1|FK026319
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGGGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209708401|gb|BW665376.1|BW665376
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|31461422|gb|CD403450.1|CD403450
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|14516239|gb|BI094911.1|BI094911
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTCGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|14990742|gb|BI316415.1|BI316415
EST:     TTAATACTGGAGCTCCATGCANGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAACAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|254325332|gb|GR838213.1|GR838213
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|6846455|gb|AW348745.1|AW348745
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|14516240|gb|BI094912.1|BI094912
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTCGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|22522608|gb|BU081419.1|BU081419
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|21256752|gb|BQ453640.1|BQ453640
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|213603040|gb|DB980964.1|DB980964
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|11687443|gb|BF595119.1|BF595119
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|193337763|gb|FK302984.1|FK302984
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|18730034|gb|BM525642.1|BM525642
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|207829450|gb|GD802752.1|GD802752
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|18039384|gb|BM307678.1|BM307678
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|21602235|gb|BQ612566.1|BQ612566
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|208030928|gb|GD828028.1|GD828028
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|6848147|gb|AW350437.1|AW350437
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|209713327|gb|BW684414.1|BW684414
EST:     GCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: GCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|26059076|gb|CA801990.1|CA801990
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|8401561|gb|BE057125.1|BE057125
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|193410885|gb|FK378944.1|FK378944
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|58021795|gb|CX708536.1|CX708536
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|21601324|gb|BQ611655.1|BQ611655
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|13252038|gb|BG362941.1|BG362941
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|213593444|gb|DB977131.1|DB977131
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCC
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|7692771|gb|AW760870.1|AW760870
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|298169068|gb|HO020428.1|HO020428
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|9819668|gb|BE555181.1|BE555181
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
EST: gi|31311192|gb|CD396395.1|CD396395
EST:     TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAG                         CTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT
genomic: TTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttg ... ctcttggcagCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCAAATTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGgttggtgttgttcattcattacactagttttagttttcattaagcctttttctaaatgttttgagcgctcttggcag

- - - - - - -  GGAGCT