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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGgtaggttgtagatatgtgatgcttgctactagttacttgtatgtttgctgttgtgaaatattctcctatgacgcaatgaaagagttggaaaatttaaaga...

Basic information

species Glycine max
transcript GLYMA19G34580.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 16
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 5'ss of exon 15
CTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGgtaggt----tgtag------atatgtg-atgctt---------gctactagttacttgtatgtttg-ctgttgtgaaatattctccta-tgacgcaatgaaagagttggaaaatttaaaga--------------
||||||||||| ||||||||| | |||||||| ||||| || |||||||| | ||||||  |||| || |||||||| || |  ||||||||||||||||||| |     || |       | || |  ||||||         | ||| ||  | ||   ||||||  || |   | |||||   ||  |    ||   |||   ||||   |   |||                
CTTGAGCTAGAGGAAGTTTTTGCTCTTGAAAGAGAAGGAGAGTTTGATAAATATGCTCCCCACAGAGAAAAACTTGGCAATAAGATGCTCCTATGGCATGgtaagccaactgcaaccagccacatttacatgctttgggaaacagatacaagaaatttcattgtttggttgattctatatatttggctggttgatcatcaaaacccttggtttaaccaaaataaatctgctttcag

upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 16
CTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGgtaggttgtagatatgt-----gatgcttgctactagttacttgtatgtttgctgttgtgaaatattctcctatgacgcaatgaaagagttggaaaatttaaaga
||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||  | || || |||  |||||| |||||||| |||||||||| ||  |  || |        |||    ||| |   |   ||| |  | |  || |    || | |||| | |    | |   ||   |  |   ||| ||  
CTTGAACTAGAAGAGGTTTTTTCGCTTGAAAGGGAAGGAGAATTTGATAAGTTTGCTTCTTATCGAGAAAAGCTTCAAAACAGGATGCTCCTCTGGCATGgtaagtgattaatttactctgaaatgtcctctattgtgttactgtgtaatagaagtggctctatttgctccaa-gttttattttcag---taaagtttttgaat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398054|gb|EV267932.1|EV267932
EST:     GTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGTATG                         GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTG
genomic: GTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGgtaggttgta ... tctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTG