1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAGTGGGTTGGACTCAAATGTGCAACAATATGGTTCTACAATAACAGTGCTTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttggtttatttgtgcatgtgctttatacgttgcatacagttgtggcccagcttgtaaactaattaactaatgtcatttatcattatgttcttttcattataaaaatacag
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|6724458|gb|AW308857.1|AW308857
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAGCCAACGTGATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|6665820|gb|AW277337.1|AW277337
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|193567106|gb|FK526901.1|FK526901
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTTATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|193547063|gb|FK504066.1|FK504066
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTEST: gi|208274674|gb|GE069678.1|GE069678
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCEST: gi|214007886|gb|DB986461.1|DB986461
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACC
EST: TTACATCAACCAACGTAATAGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|208206462|gb|GE007909.1|GE007909
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTTATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTEST: gi|58024810|gb|CX711551.1|CX711551
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|193337776|gb|FK302101.1|FK302101
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: ATGAAAATTCATTTCTTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|192308407|gb|FK002807.1|FK002807
genomic: ATGAAAATTCA-TTC-TTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|208142892|gb|GD942386.1|GD942386
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|208200211|gb|GE001279.1|GE001279
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: AATGGATGAAAATTCATTTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|298173738|gb|HO017074.1|HO017074
genomic: AATGGATGAAAATTCA-TTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|208255773|gb|GE052752.1|GE052752
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|207826228|gb|GD799059.1|GD799059
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|58020822|gb|CX707564.1|CX707564
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|207696409|gb|GD678198.1|GD678198
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: ATGGATGAAAATTTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|207769375|gb|GD742039.1|GD742039
genomic: ATGGATGAAAA-TTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: TTACATCAACCAACGTAATGGATGAGAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCAEST: gi|6070570|gb|AW099957.1|AW099957
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCA
EST: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTEST: gi|193391341|gb|FK356016.1|FK356016
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: GAGCCGAAGAAG GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: GAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGGGTTGGACTCAAATGTGCAACAATATGGTTCTACAATAACAGTGCTTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttggtttatttgtgcatgtgctttatacgttgcatacagttgtggcccagcttgtaaactaattaactaatgtcatttatcattatgttcttttcattataaaaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG