Sequence
atgc intronic sequence ATGC exonic sequenceGAGAAGGTACAGGGCTTCTTCGCCTCCATAGTACATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAGgtatggcctaagttgtgctcaccttaataaaaaaaaggctaagtggttttcattattggttgctacatttttatacattttgtaagtgtttgatgtctaggcagcatgtttataagcctaatttgtcctttggcatcatatgtgagccatttttttcatgacccatgctaaacag
Basic information
species | Glycine max |
transcript | GLYMA19G02260.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G01310.1 (Arabidopsis thaliana), 5'ss of exon 19
GAGAAGGTACAGGGCTTCTTCGCCTCCATAGTACATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAGgtatggcctaagttgtgctcaccttaataaaaaaaaggctaagtggttttcattattggttgctacatttttatacattttgtaagtgtttgatgtctaggc-agcatgtttataagcctaatttgtcctttggcatcatatgtgagccatttttttcatgacccatgctaaacag
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GTGAAGGGACTGGTTTGCTTCGTCTCCATAGTACGTACCGTCATGACCTTAAAATTTACAGCTCTGACGAGGGACGTGTTCAGgtacag----atttacgcttttagtagtgaagatgagcata--tgatattca--attgttgaacatatact-gcaagctttactactcctcactgtttgcaccaaaatatgtgaaag---agctcatcgcatagaa--aaatgtaaactgatttg--cactgttgacag-------
upper sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 5'ss of exon 19
GAGAAGGTACAGGGCTTCTTCGCCTCCATAGTACATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAGgtatggcctaagttgtgctcaccttaataaaaaaaaggctaagtggttttcattattggttgctacatttttatacattttgtaagtgtttgatgtctaggcagcatgtttataagcctaatttgtcctttggcatcatatgtgagccatttttttcatgacccatgctaaacag
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GGGAAGGTACCGGTTTGCTCCGTCTCCATAGTACATACCGTCACGACCTTAAAATTTACAGCTCTGACGAGGGACGTGTTCAGgtacaactt----tctgccgatttcgtattgacgatgaccattgagcattca--aatgttcactatatcttctggatattcctcatcggttg-cactgagatatgatatgaatgtatgcag------------------------------------------------------
upper sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 18
GAGAAGGTACAGGGCTTCTTCGCCTCCATAGTACATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAGgtatggcctaagttgtgctcaccttaataaaaaaaaggctaagtggttttcattattggttgctacatttttatacattttgtaagtgtttgatgtctaggcagcatgtttataagcctaatttgtcctttggcatcatatgtgagccatttttttcatgacccatgctaaacag
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GTGAAGGCACTGGCCTGCTTCGCCTTCATAGTACTTATCGTCATGATCTAAAAATTTACAGCTCAGATGAGGGTCGTGTACAGgtacagccttaatcatctgcat------------aatccttggttgttt-cat---------ctgc-cccccaagcctttggagtgtgccag-----tggaaggcatagttgttatcc--acttttcctg---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15813209|gb|BI785484.1|BI785484EST: CATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAG ATGTCTGCAGCTGCTTTTGCCAAAGGTCTTCTTGACCTAGAGGGGCAGCTA
genomic: CATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAGgtatggccta ... tgctaaacagATGTCTGCAGCTGCTTTTGCCAAAGGTCTTCTTGACCTAGAGGGGCAGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAAGGTACAGGGCTTCTTCGCCTCCATAGTACATACCGTCATGATCTCAAGATTTACAGCTCTGATGAGGGTCGTGTGCAGgtatggcctaagttgtgctcaccttaataaaaaaaaggctaagtggttttcattattggttgctacatttttatacattttgtaagtgtttgatgtctaggcagcatgtttataagcctaatttgtcctttggcatcatatgtgagccatttttttcatgacccatgctaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC