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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGACATACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataagattgtgaagtttcaactaccgttagaatccttgaaataatcgctacaggtttacaatgtccccaccaaccaacttgagcttattcttcttgcaga

Basic information

species Glycine max
transcript GLYMA18G52270.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os09g06499.1 (Oryza sativa), 5'ss of exon 17
-TGTGACATACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataagattgtgaagtttcaactaccgttagaatccttgaaataatcgc-tacaggtttacaatgtccccaccaaccaacttgagcttattcttcttgcaga
 ||| |||||||| ||||| ||||||||||||||| | || ||||||||||| || ||||     ||  | || ||||| |       || | |   || |   | ||   |||   | |||| ||  |  ||||||| |   ||     ||   |  |       || |||  |  ||||| 
CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCAAGAATACAGGGATCGCCATATCCAGgttggcacttcttctaa---ttaattgaacgagtgaaaagtagaaacaaatgtgtacaggtatggcattaaatcattgagtact----actgattggt--tgcag-

upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 16
-TGTGACATACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaa--------taagattgtgaa-gtttcaactaccgttagaatccttgaaataatcgcta--caggtttacaatgtccccaccaaccaacttgagcttattcttcttgcaga
 ||| |||||  |||| || ||||| ||||| |||||||| ||||||||||| |||||||||| |||||| || ||||| |||         ||    |||     ||||| ||   |  |     || |||| |  |     ||    || ||||| |   || |||   ||| |     ||   ||| || 
CTGTTACATATGTAGACTCCAGTGCCGTTCAAGCTTTGAAGGACTTGTATCACGAGTACAAATCACGGGATATCCAGgttgaaagcccattcaacgcagtgtgcaattcaaatattttacggtctatttaaatcactgaagatcataactataatgtactttcccacct-tttgtg-----tcactttgtag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395894|gb|EV265771.1|EV265771
EST:     TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGA                         TTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
genomic: TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataaga ... ttcttgcagaTTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
EST: gi|254344974|gb|GR855631.1|GR855631
EST:     TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGA                         TTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
genomic: TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataaga ... ttcttgcagaTTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
EST: gi|10231708|gb|BE800596.1|BE800596
EST:     TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGA                         TTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
genomic: TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataaga ... ttcttgcagaTTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
EST: gi|10233753|gb|BE802641.1|BE802641
EST:     TCACGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGA                         TTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
genomic: TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataaga ... ttcttgcagaTTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
EST: gi|192300273|gb|FG988780.1|FG988780
EST:     TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGA                         TTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG
genomic: TCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGGtagaataaga ... ttcttgcagaTTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGG