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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCACTTCCTGTAATCATTGTTGGATTATTTGACAAggtaggatatttgttccaacagttacttttgcagttgtgcttcacttgttacattacagtttttcttcatggatggcatgttttgattagtttcttgtgcctttgcca

Basic information

species Glycine max
transcript GLYMA18G16990.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G020553_T01 (Zea mays), 5'ss of exon 3
CTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCACTTCCTGTAATCATTGTTGGATTATTTGACAAggtaggatatttgttccaacagttacttttgcagttgtgcttcacttgttacattacagtttttcttcatggatggcatgttttgattagtttcttgtgcctttgcca
 ||| |||||||| ||| | || |||||||| |||||||||||  ||||||| ||||| || || || || |||||||| || |||||||| ||||| ||||||||||   | |||  ||  ||  || || |||||| || |     || || || || | |   || |    |                                 
-TGGTTTTTCTGGCCAGCGGTTTTATGATGACTGGTTTCAGTCTCTATATAACGTTATTTTTACTGCGCTACCTGTAATTATAGTTGGATTGTTTGATAAGgtaggat---tattcttac--ttgtttatggagttgt-ctcctgcaattgcacta-agctctgagtcgtttcag---------------------------------

upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 23
CTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCACTTCCTGTAATCATTGTTGGATTATTTGACAAggtaggatat---ttgttcca-acagttacttttgcagttgtgcttcacttgttacattacagttt-ttcttcatggatggcatgttttgatt---agtttcttgtgcctttgcca-----------------------------------------------------------------------------
 ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || ||||| || || || |||||||||||  | ||||||||||||   | |   || ||  | | | ||  |||     |  |  || |    |   |  | | ||  ||  |  || ||    || ||| |||   | | |  | |    |   ||                                                                             
-TGGGTTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCTTTATATAATGTTATATTTACAGCCCTGCCAGTGATCATTGTTGGCCTCTTTGACAAGgtattctgtcctttattttataaacttgatttcaacttcataattgaaccatgggagcaaatttcattagttttgtatcat-tgcttttattctgaatgttctattaaataagcaatcttaaaaatttttatttgttgctttgctcatccatttttgcaatctaaatgaagaactactttaattttttccag