Sequence
atgc intronic sequence ATGC exonic sequenceGTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgtttcattgaacataatccttttacgtagttcattatcttgttggctagtgcaagagattgcatttgaaagtttat...
Basic information
species | Glycine max |
transcript | GLYMA18G06770.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgtttcat-tgaacataatcctttta-cgtagttcattatcttgttggc-tagtgcaagagattgcatttgaaagtttat-
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GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaa----cagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatatatgtttacttgtgcaatcttaaa
upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaag-ctcaatgttttatttcattgtttcattga------acataatccttttacgtagt-----tcattatcttgt---tggctagtgcaagagattgcatttgaaagtttat-----------
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GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 14
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgtttcattgaacataatcctt-ttacgtagttca--ttatcttgttggctagtgcaagagattgc--atttgaaagtttat
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GTTTATGAGCCAGTGGAAGAAGGCTCTTACATCAAAATGATTGATATGGTTGGTGGCCAAGATGGACAGATACAGgtaagtttcacctcttaaatgattaacaga---gacatgcttttaattatgtacttaaggtttactaagtgcatgtttggatacatttcctattttttggttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17964344|gb|BM271080.1|BM271080EST: CTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAA GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTG
genomic: CTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaa ... tttggtctagGTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgtttcattgaacataatccttttacgtagttcattatcttgttggctagtgcaagagattgcatttgaaagtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA