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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTTCAACCTCGCCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGgttggtttgaatattttttttccaagtttcattgctggagttagggtaaatcctttgaattagatgtgccattattcttgagcctgtctgtacttgagtc...

Basic information

species Glycine max
transcript GLYMA17G30910.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G30910.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 17
GAGATTTCAACCTCGCCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGgttggtttgaat----attttttttccaagtttcattgctggagttagggtaaatcctttgaattagatgtgccattattcttgagcctgtctgtacttgagtc
||||||||||||||| |  || || || || || |||||||||||||| ||||| || ||||| || ||||| |||||||| | |||  ||||| || ||||| || |   |    || |  ||    | ||| |     |    || |  |||     |  |    | ||| |||| || ||   |        |        
GAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCGATACTGGACGTGGAGACACAAGCTTGTCGGCATTCATTACAGgttagtatatttttcaatgtcattatacaatttaaccaaggacaatatgaaaaaatgcctacaaagaaagtgtcattcttttttcacagagaaaaaaaaa----

upper sequence: GLYMA17G30910.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 7
GAGATTTCAACCTCGCCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGgttggtttgaat----attttttttccaagtttcattgctggagttagggtaaatcctttgaattagatgtgccattattcttgagcctgtctgtacttgagtc
 |||||||||||||| |  || || || || || |||||||||||||| ||||| || ||||| |||||||| |||||||| | |||  ||||| || ||||| || |   |    || |  ||    | ||| |     |    || || |||     |  |    | ||| |||| || ||    | |     |    ||  
TAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCAATACTGGATGTGGAGACACAAGCTTGTCGGCATTCATTACAGgttagtatatttttcaatgtcattatacaatttaaccaaggacaatatggaaaaatgcctataaagaaagtgtcattcttttt---tcagagaaaaaaaaagg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400773|gb|EV270587.1|EV270587
EST:     TTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCATTAAAG                         GGACATACAAAATCAATACGTTCTGTGTGTTGGGAACCTTCTGGGGAGTTT
genomic: TTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGgttggtttga ... acgataatagGGACATACAAAATCAATACGTTCTGTGTGTTGGGATCCTTCTGGGGAGTTT
EST: gi|16348259|gb|BI973854.1|BI973854
EST:     TTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAG                         GGACATACAAAATCAATACGTTCTGTGTGTTGGGATCCTTCTGGGGAGTTT
genomic: TTGTTTCTATACTTGATGTGGAAACACAAGCATCTCGATATTCACTAAAGgttggtttga ... acgataatagGGACATACAAAATCAATACGTTCTGTGTGTTGGGATCCTTCTGGGGAGTTT