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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgtatgattcccagatttgtaatgaggcttcatgattttgctgttagcattacaattgtttttccttttttcttctctgcttttagttatgtaaatttaat...

Basic information

species Glycine max
transcript GLYMA17G15510.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G48520.1 (Arabidopsis thaliana), 5'ss of exon 16
GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgta---tgattcccagatttgtaatgaggcttcatgattttgctgttagcattacaattgtttttccttttttcttctctgcttttagttatgtaaatttaat
| | |  | |||| | ||||||||| ||||||||||||| |||||||| || ||||| || ||| |||| ||| |||||   | |||| ||| ||   |||     |   | || |       |  || |  |  |||||  ||   |  || | | |||   ||  | | |       
GTGTACCCATATTCAGAATCTGCAGCAACTGCTCTTTGCGTCTTCAACTACGGCACAACCCATATTGACACCTTGGgtaaaataattctcag-ttaccaattttagtcgttaatctaa--accaatat-atgaaagttttaactaaatg-ttgtttccttcatgtattattag------

upper sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0333g00070.t01 (Vitis vinifera), 5'ss of exon 12
GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgtat--gattcccagatttgtaatgaggcttcatgattttgctgttagcattacaattgtt---tttccttttttcttctctgcttttagttatgtaaatttaat
| ||| ||||||  ||| | | ||| ||||||| || ||||| |||||||| ||||| |||||||||||  |||||||||  ||||      |   |     ||| | ||   |||| | |    |||  || |||    |||||   || | | | |  |  | | ||||| | |  |||
GTGCACTCTTATCCAAAGTTTACAGCAACTGCTATTCGCATCATCAACAACTGCACAACCAATACTGACAGCTCGGgtatatgatttttcattacatctcacggcct-ata--tttgttatacaaattcaaaatgtgaaatttccaacttccatttatagtccttgctatgttagt--aat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574285|gb|CX547260.1|CX547260
EST:     AACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGG                         CCATTAATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTGTCT
genomic: AACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgtatgattcc ... tcttatttagCCATTAATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTGTCT
EST: gi|58014978|gb|CX701720.1|CX701720
EST:     AACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGG                         CCATTAATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTGTCT
genomic: AACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgtatgattcc ... tcttatttagCCATTAATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTGTCT
EST: gi|17401211|gb|BM177993.1|BM177993
EST:     AACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGG                         CCATTAATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTGTCT
genomic: AACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgtatgattcc ... tcttatttagCCATTAATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTGTCT