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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCAATTGCAATAAATAATTTGAGAATGCTTGGGGGAGAACCTGATACCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaatttttagtttaaatatattattttcagtgtaatattatttctgaaaagtgcttctttaaattgtcag

Basic information

species Glycine max
transcript GLYMA17G14450.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644472|gb|FK589938.1|FK589938
EST:     CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
EST: gi|254340092|gb|GR858217.1|GR858217
EST:     CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
EST: gi|208217969|gb|GE018283.1|GE018283
EST:     CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
EST: gi|308098914|gb|HO760755.1|HO760755
EST:     CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG