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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTTGGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGgtattcaaagctaggttacttattgcattataactttatgaaataccggtagattgtgaaattcatattacagccatgagtcgagtgggaatcaactagg...

Basic information

species Glycine max
transcript GLYMA17G13080.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13080.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 16
GCTTTTTGGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGgtattcaaagctaggttacttattgcattataactttatgaaataccggtagattgtgaaattc--atattacagccatgagtcga-gtgggaatcaactagg---
|| ||||||||||| || || || || |||||||||||||| ||| ||||||| ||||||||  || |  | | || | || |||||  | || || | | |    ||  || |||| ||    ||||      ||| |   | |     ||  ||| |    
GCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGgtattataatc--gctcacct-tttcatta--agttgatcacacattt-tactttttgaacttacagtattttccttatgcgctaatgaactcattgactggaaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041385|gb|BM309679.1|BM309679
EST:     GGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAG                         GAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGA
genomic: GGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGgtattcaaag ... tgtttaacagGAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGA